Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61969g00002 ATGGGTGGCAACGGCAAGCACCGTTGGAGAATTTCCTTCCATCGCCATTCCAAGCTCGAACACCAGCAGCCCAAGCATCCCCCTCCCCCACCCAACGAGTTCATATGCCCCATTTCCGCCTCATTAATGTCCGACCCGGTCGTTGTCTCTTCGGGTCAAACCTTCGAGCGCCTTTCAGTTCAAGTCTGTAACGACCTCTCCTTCTCTCCTACCCTACCCGACGGGACCCGACCCGATTTCTCAACCCTCATCCCCAATCTCAACATCAGAACCAGCATCCACAACTGGTGCAAGAAAACCAACACCATACTCCCGTCACCACCGGATTACTCCTCACTCGAGCGCATCGTCAAGGACGCAATCGCCGCTGCCGCTCCTCCGCCGCCCCCGTCGGACCCGGATATTAGGGTTTCTGAAAAGGAGCTCCTCAAGGCAGTGCCGGACAACCCGCCCGTGATATTCTCCCACGCCGCAACCGAGTTAGGTCCCCGAGTCAACCACTTCAACTCGGGATCCTCAGAGGAGTCCGTCGTCATCGGTGGCGCCAGTCCGGGTACTCCGCTTCCGTTCACGGTTCGGCCGACGTGCTTCTCGTCGTCGTCCTCCGTCTCCTCCGTTGAAATTACGGAGGTCGAGATCCAAGGGCAAAACCCTAGCGGGCCTCTTTCAGAGGAAGAAGAAAAGCTCGTGGCGAAGATGAAGAGCAACGAGGTGTTCGAGCAAGAAGAAGGAGTGATCTCGCTCCGGAGCCTGACGCGGAGCAGCGAGGAAGCAAGGGTTTCACTCTGCACGCATCGAATTCTCTCCCCTCTGCGTTCTCTCGTGGCATCGCGGTACGGCGTCGTTCAGGTCAACGCTGTCGCCTCGCTGGTCAACCTCTCTCTTGAGAGACAAAACAAGGTGAGGATCGTGCGGTCAGGATTCGTTCCGTACCTGATCGACGCACTCAAGGGCGGATCCACTGAGACTCAGGAACACGCTGCAGGCGCGCTTTTCAGTTTAGCTTTGGATGATGATAATAAGATGGCGATTGGGGTCCTCGGCGCGTTGCACCCGCTTATGCACGCACTGCGGTCCGAGTCCGAGCGAACTCGTCATGACTCGGCGCTGGCGCTGTACCACTTGACTCTGGTTCAGAGCAACCGAGTCAAGCTTGTGAAACTCGGCGCGATCCCCACCTTGTTGTCGATGGTGAAATCTGGAACCTTCGCGAGTAGGGTTCTGTTGATTCTTTGTAACCTTGCGGTTTGCATGGAAGGGAGGACGGCGATGCTGGATGCTGATGCGGTGGAGTGTTTTGTGGGTTTGTTGAGGGAGAACGAGTTGGACTCGGAGTCGACTCGGGAGAACTGTGTGGCGGCGCTGTATGCTCTGAGTCACAGGAGCCTTAGGTTCAAGGGGCTGGCGAGGGAGGCTAGGGCGATGGAAGTGCTGAAGGAGGTGGCGGAGGTGACGGGGACGGAGAGGGCGAGGGAGAAGGCCAAGAGGATTTTGCAGATGATGAGGGCTGCCGGTGATGGGGAGGATGATGATGGGTTGGAGCATGATGGGGTTTTGGAATCCGGCGGGATGAGTCGGATGAGGTTCCGAGTTGGGGGCAATGGAGGCAGGAACAATGCCAACACTACTACGTTCTAG 1638 0.5745 MGGNGKHRWRISFHRHSKLEHQQPKHPPPPPNEFICPISASLMSDPVVVSSGQTFERLSVQVCNDLSFSPTLPDGTRPDFSTLIPNLNIRTSIHNWCKKTNTILPSPPDYSSLERIVKDAIAAAAPPPPPSDPDIRVSEKELLKAVPDNPPVIFSHAATELGPRVNHFNSGSSEESVVIGGASPGTPLPFTVRPTCFSSSSSVSSVEITEVEIQGQNPSGPLSEEEEKLVAKMKSNEVFEQEEGVISLRSLTRSSEEARVSLCTHRILSPLRSLVASRYGVVQVNAVASLVNLSLERQNKVRIVRSGFVPYLIDALKGGSTETQEHAAGALFSLALDDDNKMAIGVLGALHPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGAIPTLLSMVKSGTFASRVLLILCNLAVCMEGRTAMLDADAVECFVGLLRENELDSESTRENCVAALYALSHRSLRFKGLAREARAMEVLKEVAEVTGTERAREKAKRILQMMRAAGDGEDDDGLEHDGVLESGGMSRMRFRVGGNGGRNNANTTTF 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61969g00002 545 SUPERFAMILY ARM repeat 228 501 IPR016024 -
Stsc61969g00002 545 FunFam RING-type E3 ubiquitin transferase 224 501 - -
Stsc61969g00002 545 Pfam U-box domain 31 100 IPR003613 GO:0004842|GO:0016567
Stsc61969g00002 545 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 307 344 IPR000225 GO:0005515
Stsc61969g00002 545 SMART Ubox_2 33 96 IPR003613 GO:0004842|GO:0016567
Stsc61969g00002 545 SMART arm_5 378 416 IPR000225 GO:0005515
Stsc61969g00002 545 SMART arm_5 296 336 IPR000225 GO:0005515
Stsc61969g00002 545 SMART arm_5 417 460 IPR000225 GO:0005515
Stsc61969g00002 545 SMART arm_5 337 377 IPR000225 GO:0005515
Stsc61969g00002 545 SUPERFAMILY RING/U-box 20 106 - -
Stsc61969g00002 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 104 IPR013083 -
Stsc61969g00002 545 Gene3D - 405 510 IPR011989 -
Stsc61969g00002 545 Pfam Armadillo/beta-catenin-like repeat 337 376 IPR000225 GO:0005515
Stsc61969g00002 545 Pfam Armadillo/beta-catenin-like repeat 298 335 IPR000225 GO:0005515
Stsc61969g00002 545 ProSiteProfiles U-box domain profile. 29 103 IPR003613 GO:0004842|GO:0016567
Stsc61969g00002 545 PANTHER U BOX DOMAIN-CONTAINING 23 502 - -
Stsc61969g00002 545 Gene3D - 222 404 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61969g00002 Stsc-Chr61969 9391 11906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61969g00002 1 545 U-box Gene Family AT5G65200 56.028 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61969g00002 - - aip:107643932 922.924