Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61967g00001 ATGGGGAGAAGCCCTTGTTGCTCAAAGCAGGGCTTGAATCGCGGTGCTTGGACAGCTCAAGAAGACAAAATCCTCAGAGATTATATCACCCTCCATGGCCAAGGAAAGTGGAGGAACCTTCCTCAAAGAGCAGGGTTGAAACGTTGTGGGAAAAGTTGCAGGCTTCGATGGTTAAATTATCTGAGGCCAGATATTAAAAGAGGAAACATATCACCAGATGAAGAAGAACTTATCATAAGACTTCACAAGCTACTTGGAAACAGATGGTCCCTTATAGCCGGAAGGCTTCCAGGAAGAACAGACAATGAGATCAAGAATTATTGGAACACAAATTTAGGCAAAAAAGTTAGAGATCTTCAAACACTAAGCAATGAAACAAAGAACAATAATAATAACTGTAACAACAGCAGCAGCAGCGACGTTCAGAAACCAACAACAATGCCTCCTTCAACAAGTTACAAGGTGGTCCCCACTACCACTCCCTCTCTTTCACCGTTAAACGATTCACATTCTCTCCTCGTCCGTACAAAGGCTTCAAAGTGCTCGAAGTCACTATTCTTTGAACCTTCACCAACAAATACTTCATTATTGCCGCAGAACAAAACTGTTGCTAATAATAGCGAAGAACTTGATGAAGCTGGTGGCGGTTTGATGCCACCGCCGGGATTGTTGCTTCCGAATAACGAAGCAGCGGCGAGCAATAATGGTGGCTACGGCGATAACAACAACATGGTGATGATGGCAATGGAGATCAGTAACAATAATAATAATATAGAAGAATACAAAGAGATTTCGACAACAGAATTGCTCTTGGATTTTGATATTGGGGAGATTTGCTTGCCTTCTCTTCTGAATTCGGATTTCAAAGATATATGCGATTTCGGTTACAATAATAATAGCAGTAACAGTGAAGATCTGTTGGGTTTCTTATCGGAGAACATGCTGGTTTCCTCTAATGAAATTCTAAAGCAAGCAACCATCGTACCAAGCAACTTTTGTGACGAAACAAATTCTGAGGTAGAAAACAGTTTCTGGGAAGACTGGCCATAA 1050 0.4152 MGRSPCCSKQGLNRGAWTAQEDKILRDYITLHGQGKWRNLPQRAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVRDLQTLSNETKNNNNNCNNSSSSDVQKPTTMPPSTSYKVVPTTTPSLSPLNDSHSLLVRTKASKCSKSLFFEPSPTNTSLLPQNKTVANNSEELDEAGGGLMPPPGLLLPNNEAAASNNGGYGDNNNMVMMAMEISNNNNNIEEYKEISTTELLLDFDIGEICLPSLLNSDFKDICDFGYNNNSSNSEDLLGFLSENMLVSSNEILKQATIVPSNFCDETNSEVENSFWEDWP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61967g00001 349 FunFam MYB-related transcription factor 13 66 - -
Stsc61967g00001 349 CDD SANT 16 61 IPR001005 -
Stsc61967g00001 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc61967g00001 349 FunFam Transcription factor TT2 70 140 - -
Stsc61967g00001 349 Gene3D - 70 144 - -
Stsc61967g00001 349 Gene3D - 14 66 - -
Stsc61967g00001 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc61967g00001 349 SMART sant 66 114 IPR001005 -
Stsc61967g00001 349 SMART sant 13 63 IPR001005 -
Stsc61967g00001 349 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 183 - -
Stsc61967g00001 349 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc61967g00001 349 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc61967g00001 349 CDD SANT 71 112 IPR001005 -
Stsc61967g00001 349 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc61967g00001 349 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc61967g00001 349 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc61967g00001 349 MobiDBLite consensus disorder prediction 124 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61967g00001 Stsc-Chr61967 3063 5958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61967g00001 1 172 MYB Transcription Factor Family AT4G38620 55.114 7.50e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc61967g00001 Myb_DNA-binding 4.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61967g00001 K09422 - gmx:100802704 307.76