Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61912g00002 ATGGCAAACTATCACCGGAACAACGTCGGATCCCTCGTTCTCGGCCACCACCCTACCAAGTCCTCCGCCGCTACCGTCAACACCAACTTCCGCCTATGGAACTCCCTCTCCGCAGCCTCCTTCCGCCGCATACTCTTCGACGCCCTCAGCTGCGGCGGCGCTGCTTACCGCCGCAACAACTACACCGACTCAGCCTCCTCCAGCGAGAGATCCGAATCCGACTCCGAAGACCCGAACCCTAACCCGAAGCGCAATGTGAAGTCCGAGAAGCTCTCGGATCTCCTGAGCATGGCGGATTCGGAGGTGGAGACGGAAGCGGAGACGAAGAAGAAGGAAGAGGCTCTTGAGGAGCTGAAGCGCCTTGTGGAGGAGCTTCGGCTTCAGTCGGAGGATTCCCCGCCGGTAAGGCGAGTCGCTGCAGCTTCAGCAGTGAGGAGGCTGGCGAGGGAAGACGCTGAGGTTAGAGTGACGCTCGCAATGCTCGGAGCGATTCCGCCGCTTGCAGCCATGCTTGATTCTGAAGACATCGATTCTCAGGTGGCTTCGCTCTACGCGTTGCTCAACCTTGGAATCGGAAACGATGCAAATAAAGCCGCTATTGTGAAAGTTGGGTCTGTACACAAGATGTTGAAGCTAATTGAATCTCCAGATTCTGTGGAAACATCAGTTTCTGAAGCAATAGTTGCAAATTTTCTCGGATTGAGTGCTTTGGATTCGAACAAACCAATAATTGGATCCTCTGCAGCAGTACCATTCCTAGTTAGAACCCTTCAGAATTTAGATAATAAAACAAGCCCCCAAGCCAGACAAGATGCTCTCAGAGCAATGTACAATCTTTCAATCTTCCCATCTAATGTTCCATTCATTTTGGAAACCAACTTGGTCCCATTTCTGATAAACTCCATAGGAGATATGGAAGTAACCGACCGAGCCCTCGCGATCCTAACTAACTTGGCGTCAACAAGAGAGGGTAGGAAGGCCATTAGTGCTGTCCCGGATGCTTTCCCTATCCTTGTGGATGTGTTGAATTGGACTGACTCACCGGAATGCCAAGAAAAGGCATCATATATTTTGATGGTAATGGCGCACAAGTCCTATGGTGATAGGCAGGCCATGATTGAGGCCGGGATTGTGTCGTCACTCCTTGAGTTGTCCCTTCTTGGCACCACATTGGCTCAGAAAAGGGCCTCAAGGATATTGGAATCTTTGAGGGTAGACAAAGGGAAGCAGGTTTCAGGGAGCTTCGGAGTGAATTTAGGCGCAACAGTATCCGCCCCAATCTGCGGATCGTCATCATCTTGTGCAAAGACGGATGGCGGGGGAAAGGATTGTTCGGACGAGGAGGAGGAAATGATGAGCGCGGAGAAGAAAGCAGTGAAGCAGTTAGTCCAGCAGAGTCTGCAAAACAATATGAGGAAGATTGCAAAGAGGGCCAATTTGCCTCAAGATAATGTTCCTTCAGATCATTTCAAATCACTCACTGCAAGTTCAACTTCCAAGAGCCTGCCATTTTGA 1515 0.5076 MANYHRNNVGSLVLGHHPTKSSAATVNTNFRLWNSLSAASFRRILFDALSCGGAAYRRNNYTDSASSSERSESDSEDPNPNPKRNVKSEKLSDLLSMADSEVETEAETKKKEEALEELKRLVEELRLQSEDSPPVRRVAAASAVRRLAREDAEVRVTLAMLGAIPPLAAMLDSEDIDSQVASLYALLNLGIGNDANKAAIVKVGSVHKMLKLIESPDSVETSVSEAIVANFLGLSALDSNKPIIGSSAAVPFLVRTLQNLDNKTSPQARQDALRAMYNLSIFPSNVPFILETNLVPFLINSIGDMEVTDRALAILTNLASTREGRKAISAVPDAFPILVDVLNWTDSPECQEKASYILMVMAHKSYGDRQAMIEAGIVSSLLELSLLGTTLAQKRASRILESLRVDKGKQVSGSFGVNLGATVSAPICGSSSSCAKTDGGGKDCSDEEEEMMSAEKKAVKQLVQQSLQNNMRKIAKRANLPQDNVPSDHFKSLTASSTSKSLPF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61912g00002 504 MobiDBLite consensus disorder prediction 69 110 - -
Stsc61912g00002 504 Gene3D - 264 421 IPR011989 -
Stsc61912g00002 504 Gene3D - 54 263 IPR011989 -
Stsc61912g00002 504 MobiDBLite consensus disorder prediction 485 504 - -
Stsc61912g00002 504 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 25 504 - -
Stsc61912g00002 504 MobiDBLite consensus disorder prediction 440 456 - -
Stsc61912g00002 504 SUPERFAMILY ARM repeat 117 400 IPR016024 -
Stsc61912g00002 504 MobiDBLite consensus disorder prediction 435 458 - -
Stsc61912g00002 504 Coils Coil 97 131 - -
Stsc61912g00002 504 SMART arm_5 193 236 IPR000225 GO:0005515
Stsc61912g00002 504 SMART arm_5 282 320 IPR000225 GO:0005515
Stsc61912g00002 504 SMART arm_5 237 281 IPR000225 GO:0005515
Stsc61912g00002 504 SMART arm_5 151 191 IPR000225 GO:0005515
Stsc61912g00002 504 MobiDBLite consensus disorder prediction 58 110 - -
Stsc61912g00002 504 MobiDBLite consensus disorder prediction 477 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61912g00002 Stsc-Chr61912 10221 13945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61912g00002 118 410 U-box Gene Family AT1G67530 29.333 9.23e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61912g00002 - - psat:127098188 642.114