Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61893g00003 ATGGCATCTTTATCAAGTGAGATAAGTGGCTCCACTTCGTTACCAACAAAGAAGAAGAGAAATCAGCCAGGCCATCCAGACCCTGATGCTGAAGTGATAGCGTTGTCACCAAAGAGCTTGTTGGCAACAAACCGGTTCGTATGTGATGTATGCAACAAAGGGTTTCAGAGAGACCAGAACCTGCAGCTTCATAGAAGGGGACACAATCTGCCATGGAAGCTAAAGCAAAGAAGTAACAAAGAGGTAATAAGGAAGAAGGTGTACGTGTGTCCGGAGCCAACTTGCGTCCACCATGACCCCTCAAGGGCACTCGGCGACCTCACTGGAATCAAGAAGCACTTCTGCAGAAAGCACGGCGACAAGAAGTGGAAGTGTGACAAGTGCTCTAAGCGCTATGCTGTTCATTCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAGAGAGTACAAATGTGACTGCGGTACCATTTTTTCCAGGAGGGATAGTTTCATAGCTCACAGGGCATTCTGTGATGCTCTAGCACAAGAGAGTACCAAAGCAAAGCAATCCCAACGTTATTGTATCCATCATCATCATTCATCAACATCAGTGAAGAAAGAATTGAAAGAAGTTAATTTAAGATCAGAAAATACCATTCCTTCATGGTCAGTAGGGGTGGGAGGAGAAGCAAGCCATCATCATGGAAGAGCATGGCTGCTTCTCATTCTGTTACAAAAGGTGCTCATCATCACGTTCCTGAAAGCACCACCACCTTGTTGTCGTCGATGGTGCCGATATATTCATGATCATGTGTTTCTGGATTTGGAGATGGCTTCACGTGAAGAGATAGGGACCGGAGGGATGCTGTTTGCTCGTCATCATCAAGGATTCTTGGAATCTTATGAGAGTAATAACAATGGCGCTGACGATGATGAGCACACCAAAGAAGCTTCTCTTGTTGTTCATGGCGATATGATGATGGATCATCATGGTACAAGTACCAGCTTGAGGAGGCTCTAA 1002 0.4551 MASLSSEISGSTSLPTKKKRNQPGHPDPDAEVIALSPKSLLATNRFVCDVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGDKKWKCDKCSKRYAVHSDWKAHSKICGTREYKCDCGTIFSRRDSFIAHRAFCDALAQESTKAKQSQRYCIHHHHSSTSVKKELKEVNLRSENTIPSWSVGVGGEASHHHGRAWLLLILLQKVLIITFLKAPPPCCRRWCRYIHDHVFLDLEMASREEIGTGGMLFARHHQGFLESYESNNNGADDDEHTKEASLVVHGDMMMDHHGTSTSLRRL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61893g00003 333 Gene3D Classic Zinc Finger 46 90 - -
Stsc61893g00003 333 MobiDBLite consensus disorder prediction 1 31 - -
Stsc61893g00003 333 FunFam protein indeterminate-domain 12-like 25 94 - -
Stsc61893g00003 333 Gene3D Classic Zinc Finger 101 183 - -
Stsc61893g00003 333 SMART c2h2final6 123 143 IPR013087 -
Stsc61893g00003 333 SMART c2h2final6 88 118 IPR013087 -
Stsc61893g00003 333 SMART c2h2final6 46 68 IPR013087 -
Stsc61893g00003 333 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 195 IPR031140 -
Stsc61893g00003 333 SUPERFAMILY beta-beta-alpha zinc fingers 45 143 IPR036236 -
Stsc61893g00003 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 68 IPR013087 -
Stsc61893g00003 333 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Stsc61893g00003 333 MobiDBLite consensus disorder prediction 1 19 - -
Stsc61893g00003 333 FunFam protein indeterminate-domain 5, chloroplastic-like 101 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61893g00003 Stsc-Chr61893 3665 5607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61893g00003 17 185 IDZ Gene Family AT3G50700 84.615 1.48e-108 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc61893g00003 zf-C2H2_6 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61893g00003 K25870 - mof:131151130 338.576