Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61883g00001 ATGAAGGATTCGATTTTTTGTTGGTGTTGGATTTGTTTTGTTTTTATGGTTTTTCTCTTTTGTAATTTGGGGTTTGAGGGATCAAGAGCAATGGAGTCTCGGATGGATAAGTATAAGATCATGGAACAGATCGGAAGAGGTGCTTTTGGAGTTGCCATCCTTGTAAATCGCAAAGCAGAAAAGAAAAAATATGTGTTGAAGAAAATTAGGCTTGCTATGCAGATTGAAAGATGCAGTAGATCTGCACATCAAGAGATGGCTCTGATTGCTAGAATCCAGCATCCTTACATTGTAGAATTCAAGGAGGCATGGGTTGAGAAGGGCCATGTTCATACCGTCATACGCAGTGACGACAGTGCAAGCTTGATAATACGCAAGGAATCAAGTGAAGGGGAACGATGGAATGTTAAAATTTGA 417 0.3981 MKDSIFCWCWICFVFMVFLFCNLGFEGSRAMESRMDKYKIMEQIGRGAFGVAILVNRKAEKKKYVLKKIRLAMQIERCSRSAHQEMALIARIQHPYIVEFKEAWVEKGHVHTVIRSDDSASLIIRKESSEGERWNVKI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61883g00001 138 ProSiteProfiles Protein kinase domain profile. 38 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61883g00001 138 FunFam Probable serine/threonine-protein kinase nek1 34 115 - -
Stsc61883g00001 138 SUPERFAMILY Protein kinase-like (PK-like) 29 114 IPR011009 -
Stsc61883g00001 138 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Stsc61883g00001 138 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 35 125 - -
Stsc61883g00001 138 Pfam Protein kinase domain 38 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61883g00001 138 Gene3D Phosphorylase Kinase; domain 1 22 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61883g00001 Stsc-Chr61883 6801 9610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61883g00001 35 113 Core Cell Cycle Gene Families AT1G66750 32.911 6.06e-09 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc61883g00001 Pkinase 6.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61883g00001 K08857 - qsa:O6P43_028578 150.214