Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61854g00003 ATGGAAGAGGTTGTGATCATAATCGATGACTCGAAATTAATATCTGCGGTTGGTCCTCGCTGTAGAATATGTCACGATGAAGACTTTGAGAGCTCAACAACCTTGGAAGCACCATGTGCTTGTTCTGGAACTGTTAAGTTCGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACCATATGTGAACTATGTCTTCAGCAATATCAACCTGGATATACAGCACATCCTAAGAAGTCTCACATAAATAATGAAGCAATGTCCACTAGGATGGAGGAAGAAGAAGAATCAGATGGAAGAATAGAGATAATGGATGAAGTGGAAGGAGTTGAGTATGAGCAACCAGAATGCAGCGCAGCAGCTCAAAGAAGCGCGTCTTGCTGTCGAACACTTGCATTAGCTTTTACATTTGGATTGCTTGTAAGACAATTATTCTCAGTGCTTTCAACTGGAACGGAAGATTATCCATTTACACTTCTAACAGTTATTATACTAAAGGCTTGCGGAATAATTTTACCTATGTACATAATTATTAGGACGATTGGAGCCATTCACAGCAGTGTTCAGCGACACTACGCGGATTATGACTATGCAATTTCATTGTCTGATACAAGTGACGAAACCCAGTCAAGACGTCTTGATGCATATGCAACAAGTATATAG 672 0.4018 MEEVVIIIDDSKLISAVGPRCRICHDEDFESSTTLEAPCACSGTVKFAHRDCIQRWCNEKGNTICELCLQQYQPGYTAHPKKSHINNEAMSTRMEEEEESDGRIEIMDEVEGVEYEQPECSAAAQRSASCCRTLALAFTFGLLVRQLFSVLSTGTEDYPFTLLTVIILKACGIILPMYIIIRTIGAIHSSVQRHYADYDYAISLSDTSDETQSRRLDAYATSI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61854g00003 223 Pfam Protein of unknown function (DUF3675) 74 184 IPR022143 -
Stsc61854g00003 223 SUPERFAMILY RING/U-box 18 73 - -
Stsc61854g00003 223 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 194 IPR033275 -
Stsc61854g00003 223 FunFam E3 ubiquitin-protein ligase MARCH4 9 78 - -
Stsc61854g00003 223 ProSiteProfiles Zinc finger RING-CH-type profile. 13 75 IPR011016 GO:0008270
Stsc61854g00003 223 Pfam RING-variant domain 21 68 IPR011016 GO:0008270
Stsc61854g00003 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 79 IPR013083 -
Stsc61854g00003 223 SMART ringv_2 20 69 IPR011016 GO:0008270
Stsc61854g00003 223 CDD RING_CH-C4HC3_MARCH 21 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61854g00003 Stsc-Chr61854 7655 9988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61854g00003 21 68 C3H Transcription Factor Family AT5G05830 40.385 4.61e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61854g00003 - - gmx:100802379 283.493