Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61852g00001 ATGACTATGATGAGTAACAACAACAACAACGTTGGTGAAAGAGGAGGAGGAGGGCAATTTGGGGACACCACTCTCACCAAGGTGTTTGTTGGTGGTTTGGCATGGGAGACTCCGAAGGAGGCACTCAGACAACACTTCGAGAAGTACGGCGAAATCCTCGAAGCCGTCATCATCTCCGACAAGCTCACCGGCAGATCCAAAGGCTATGGCTTTGTGACATTCAAGGAGGCGGAGGCTGCAAAGAAGGCATGCGAGGAGCAAGCAAGTTTGGTTATCAATGGCCGCAGAGCTAACTGCAATCTTGCTTCCCTTGGAGCTCGTCGTCCTAGGTCTAATAATTCTTCACCACCCCCACAACCAAAAGAAGGATCCAACGGTGGAGGAGGAAGGAACAACGCATCAAGCACTCCATCATCAGGTAACCACGTGCAGTGGTATTATCCTGTGGGTGCACCTCCATCGCCATACCATCATCATCATCATCCAGCCGTTCCTTTTTATGGGTACTCTACTACTCCTACCTACATCTCAACTGACATGATGAATTACAATTACAGTCAG 561 0.4938 MTMMSNNNNNVGERGGGGQFGDTTLTKVFVGGLAWETPKEALRQHFEKYGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEEQASLVINGRRANCNLASLGARRPRSNNSSPPPQPKEGSNGGGGRNNASSTPSSGNHVQWYYPVGAPPSPYHHHHHPAVPFYGYSTTPTYISTDMMNYNYSQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61852g00001 187 PANTHER BOULE-RELATED 11 177 - -
Stsc61852g00001 187 Gene3D - 19 144 IPR012677 -
Stsc61852g00001 187 SUPERFAMILY RNA-binding domain, RBD 23 132 IPR035979 GO:0003676
Stsc61852g00001 187 FunFam Putative RNA-binding protein ARP1 20 110 - -
Stsc61852g00001 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 96 IPR000504 GO:0003723
Stsc61852g00001 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Stsc61852g00001 187 MobiDBLite consensus disorder prediction 105 143 - -
Stsc61852g00001 187 SMART rrm1_1 27 100 IPR000504 GO:0003723
Stsc61852g00001 187 MobiDBLite consensus disorder prediction 103 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61852g00001 Stsc-Chr61852 173 1507 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61852g00001 22 103 C2H2 Transcription Factor Family AT2G19380 45.122 1.16e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61852g00001 - - lang:109337745 233.802