Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61835g00002 ATGTTGTCTATGGAAACAGAGGTTTCTTCGATTGAAAAAAAAAATCTGGGACATATTGACCAAATAATTGGTCCGGTACTAGATGTAGCCTTTCCCCCGGGGAAGATGCCTAATATTTACAATGCTCTGGTAGTTAAGGGTCGAGATACTGTTGGTCAACAAATTAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATCGAGTTAGGGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGCAAGTTATTGACACAGGAACTCCCCTAAGTGTTCCAGTAGGCGGAGCAACTCTAGGACGAATTTTCAACGTGCTTGGAGAGCCGATTGATAATTTAGGTCCTGTAGATACTCGTACAACATCTCCCATTCATAGATCTGCGCCTACCTTTATACAATTAGATACAAAATTATCTATTTTTGAAACAGGAATAAAAGTAGTAGATCTTTTAGCTCCTTATCGTCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTTATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCTGTATTTGGCGGAGTAGGTGAGCGTACTCGCGAGGGAAATGATCTTTATATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCCAAAGTAGCTTTAGTATATGGTCAAATGAATGAACCACCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTTCGAGATGTCAATGAGCAAGATGTACTTCTATTTATCGACAATATCTTCCGCTTCGTTCAAGCAGGATCTGAAGTATCTGCCTTATTGGGTCGAATGCCCTCTGCTGTGGGTTATCAACCCACTCTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATCACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCTGCCGACGATTTAACTGACCCTGCTCCTGCTACGACATTTGCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAGCCGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACCTCAACTATGCTCCAACCTCGAATCGTTGGTGAAGAACATTATGAGACTGCGCAACGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAAGACATTATAGCTATCCTTGGCTTGGACGAATTATCCGAAGAAGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTTTTTACCGGTTCGGCTGGAAAATATGTTGGTCTAGTAGAAACAATTAGAGGGTTTAATTTGATTCTTTCTGGAGAATTAGACGGTCTTCCTGAACAAGCCTTTTATTTGGTAGGTAATATCGATGAAGCTACTGCGAAGGCTACGAACTTAGAAACGGAGAGCAATTTGAAGAAATGA 1485 0.3987 MLSMETEVSSIEKKNLGHIDQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQVIDTGTPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPTFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSAGKYVGLVETIRGFNLILSGELDGLPEQAFYLVGNIDEATAKATNLETESNLKK 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61835g00002 494 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 15 93 IPR036121 GO:0046034|GO:1902600
Stsc61835g00002 494 NCBIfam F0F1 ATP synthase subunit beta 16 486 IPR005722 GO:0015986|GO:0045261|GO:0046933
Stsc61835g00002 494 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 371 486 - -
Stsc61835g00002 494 Gene3D - 371 494 IPR024034 -
Stsc61835g00002 494 FunFam ATP synthase subunit beta 371 490 - -
Stsc61835g00002 494 PANTHER ATP SYNTHASE 12 491 - -
Stsc61835g00002 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 373 IPR027417 -
Stsc61835g00002 494 Gene3D - 94 370 IPR027417 -
Stsc61835g00002 494 SMART AAA_5 160 352 IPR003593 GO:0016887
Stsc61835g00002 494 Gene3D - 14 93 - -
Stsc61835g00002 494 Hamap ATP synthase subunit beta [atpB]. 14 486 IPR005722 GO:0015986|GO:0045261|GO:0046933
Stsc61835g00002 494 ProSitePatterns ATP synthase alpha and beta subunits signature. 359 368 IPR020003 GO:0005524
Stsc61835g00002 494 CDD F1-ATPase_beta_CD 95 373 - -
Stsc61835g00002 494 FunFam ATP synthase subunit beta 94 370 - -
Stsc61835g00002 494 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 148 368 IPR000194 GO:0005524
Stsc61835g00002 494 FunFam ATP synthase subunit beta, chloroplastic 14 93 - -
Stsc61835g00002 494 Pfam ATP synthase alpha/beta family, beta-barrel domain 21 91 IPR004100 GO:0046034|GO:1902600
Stsc61835g00002 494 CDD ATP-synt_F1_beta_N 15 94 - -
Stsc61835g00002 494 CDD ATP-synt_F1_beta_C 375 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61835g00002 Stsc-Chr61835 2465 4425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61835g00002 90 425 Primary Pumps ATPases(2) AT1G20260 27.049 2.90e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61835g00002 K02112 - ming:20832704 920.998