Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc61835g00002 | ATGTTGTCTATGGAAACAGAGGTTTCTTCGATTGAAAAAAAAAATCTGGGACATATTGACCAAATAATTGGTCCGGTACTAGATGTAGCCTTTCCCCCGGGGAAGATGCCTAATATTTACAATGCTCTGGTAGTTAAGGGTCGAGATACTGTTGGTCAACAAATTAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATCGAGTTAGGGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGCAAGTTATTGACACAGGAACTCCCCTAAGTGTTCCAGTAGGCGGAGCAACTCTAGGACGAATTTTCAACGTGCTTGGAGAGCCGATTGATAATTTAGGTCCTGTAGATACTCGTACAACATCTCCCATTCATAGATCTGCGCCTACCTTTATACAATTAGATACAAAATTATCTATTTTTGAAACAGGAATAAAAGTAGTAGATCTTTTAGCTCCTTATCGTCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTTATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCTGTATTTGGCGGAGTAGGTGAGCGTACTCGCGAGGGAAATGATCTTTATATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCCAAAGTAGCTTTAGTATATGGTCAAATGAATGAACCACCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTTCGAGATGTCAATGAGCAAGATGTACTTCTATTTATCGACAATATCTTCCGCTTCGTTCAAGCAGGATCTGAAGTATCTGCCTTATTGGGTCGAATGCCCTCTGCTGTGGGTTATCAACCCACTCTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATCACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCTGCCGACGATTTAACTGACCCTGCTCCTGCTACGACATTTGCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAGCCGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACCTCAACTATGCTCCAACCTCGAATCGTTGGTGAAGAACATTATGAGACTGCGCAACGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAAGACATTATAGCTATCCTTGGCTTGGACGAATTATCCGAAGAAGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTTTTTACCGGTTCGGCTGGAAAATATGTTGGTCTAGTAGAAACAATTAGAGGGTTTAATTTGATTCTTTCTGGAGAATTAGACGGTCTTCCTGAACAAGCCTTTTATTTGGTAGGTAATATCGATGAAGCTACTGCGAAGGCTACGAACTTAGAAACGGAGAGCAATTTGAAGAAATGA | 1485 | 0.3987 | MLSMETEVSSIEKKNLGHIDQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQVIDTGTPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPTFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSAGKYVGLVETIRGFNLILSGELDGLPEQAFYLVGNIDEATAKATNLETESNLKK | 494 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc61835g00002 | 494 | SUPERFAMILY | N-terminal domain of alpha and beta subunits of F1 ATP synthase | 15 | 93 | IPR036121 | GO:0046034|GO:1902600 | |
Stsc61835g00002 | 494 | NCBIfam | F0F1 ATP synthase subunit beta | 16 | 486 | IPR005722 | GO:0015986|GO:0045261|GO:0046933 | |
Stsc61835g00002 | 494 | SUPERFAMILY | C-terminal domain of alpha and beta subunits of F1 ATP synthase | 371 | 486 | - | - | |
Stsc61835g00002 | 494 | Gene3D | - | 371 | 494 | IPR024034 | - | |
Stsc61835g00002 | 494 | FunFam | ATP synthase subunit beta | 371 | 490 | - | - | |
Stsc61835g00002 | 494 | PANTHER | ATP SYNTHASE | 12 | 491 | - | - | |
Stsc61835g00002 | 494 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 95 | 373 | IPR027417 | - | |
Stsc61835g00002 | 494 | Gene3D | - | 94 | 370 | IPR027417 | - | |
Stsc61835g00002 | 494 | SMART | AAA_5 | 160 | 352 | IPR003593 | GO:0016887 | |
Stsc61835g00002 | 494 | Gene3D | - | 14 | 93 | - | - | |
Stsc61835g00002 | 494 | Hamap | ATP synthase subunit beta [atpB]. | 14 | 486 | IPR005722 | GO:0015986|GO:0045261|GO:0046933 | |
Stsc61835g00002 | 494 | ProSitePatterns | ATP synthase alpha and beta subunits signature. | 359 | 368 | IPR020003 | GO:0005524 | |
Stsc61835g00002 | 494 | CDD | F1-ATPase_beta_CD | 95 | 373 | - | - | |
Stsc61835g00002 | 494 | FunFam | ATP synthase subunit beta | 94 | 370 | - | - | |
Stsc61835g00002 | 494 | Pfam | ATP synthase alpha/beta family, nucleotide-binding domain | 148 | 368 | IPR000194 | GO:0005524 | |
Stsc61835g00002 | 494 | FunFam | ATP synthase subunit beta, chloroplastic | 14 | 93 | - | - | |
Stsc61835g00002 | 494 | Pfam | ATP synthase alpha/beta family, beta-barrel domain | 21 | 91 | IPR004100 | GO:0046034|GO:1902600 | |
Stsc61835g00002 | 494 | CDD | ATP-synt_F1_beta_N | 15 | 94 | - | - | |
Stsc61835g00002 | 494 | CDD | ATP-synt_F1_beta_C | 375 | 482 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc61835g00002 | Stsc-Chr61835 | 2465 | 4425 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc61835g00002 | 90 | 425 | Primary Pumps ATPases(2) | AT1G20260 | 27.049 | 2.90e-27 | 112 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc61835g00002 | K02112 | - | ming:20832704 | 920.998 |