Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61834g00001 ATGAACGGTTTAAGAGGTGAAAGAGCTCCTCTCTTGGAAGCTGAGCGCGGCGGAAGGGGAAAGAGGGATGGAGCTTCTGCTGATCAAGTCTCAGACCTCGAGCACGGTGACGGAGTGCCGGCCGCGAATGTGGGATTCTTCCGAGTGTTTTCGCTTGCAAAACCGGAGGCTGGAAATTTGGTGATTGGTACAGGGGCTCTGTTGATCGCGGCCACATCAAGTATCTTAGTTCAAAAATATGGTGGCAAGATAATTGACATTGTGTCAGGAGATCTAAGAACTCAGGAGCAGAGGGATGAGGCTTTAGATGCTGTTAAGAACACCATTATAGAGATCTTTCTAATTGTGTTTATTGGTTCAATTTGCACGGCACTTCGAGCTTGGTTATTTTCTTCTGCTAGTGAAAGAGTTGTCGCCCGGCTAAGAAAGGATTTGTTCAGTCACCTTGTAAACCAGGAGATTGCTTTCTTCGATGTCACTCGAACGGGGGAACTCTTAAGTAGGTTGTCGGAAGATACACAGATCATAAAGAATGCCGCAACTACCAATCTTTCTGAGGCCTTGAGGAACTTAGCAACAGCACTTATGGGTCTCAGCTTCATGTTTGCAACGTCATGGAAGTTAACATTGTTGGCTTTGGCTGTCGTGCCGGTAATTTCTGTTGCTGTCCGTAAATTTGGGCGTTTCCTGCGCGAACTATCTCACAAAACTCAAGCTGCAGCTGCAGTAGCATCTTCAATTGCTGAGGAATCATTTGGTGCCATAAGAACAGTAAGATCTTTTGCTCAAGAAGATTATGAAATTTCACGCTACTCCGAGAAAGTTAGTGAGACACTCAGTCTTGGCCTTAAGCAAGCTAAAGTCGTTGGACTCTTTTCTGGAGGCCTTAATGCAGCGTCTACACTCTCTGTAATTATAGTAGTTATATATGGAGCTAGCTTGACAATCAAGGGTGCCATGTCCTCGGGTGATCTCACATCTTTCATTCTTTATAGTCTCTCAGTGGGATCTTCTATATCTGGCCTGTCGGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCCGAAGGGTATTTCAACTTTTGGATCGAGAGTCGTCAATGCCTAAGCCAGGAAATAAGTGTCCTCTTGGTGATCAAGATGGGGAAGTGGAACTCGATGATGTATGGTTTTCCTATCCATCACGCCCTAATCACATGGTGCTCAAGGGCATTACAATTAAACTGCTGCCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGACAACAATAGCTAACTTGATTGAAAGATTTTATGACCCAACCAAAGGAAAGATTTTGCTGAATGGAGTTCCTCTGGTAGAAATATCTCACAGGCATTTGCACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTGTTCAACTGTTCCATAGAGGAGAACATAGCCTATGGTTTTGATGGCAAAGTCGACGAAGTTGATATAGAAAATGCGGCTAAAATGGCCAATGCACATGAATTTATATCAAAGTTCCCAGAGAAATACAAGACCTTTGTTGGAGAGCGTGGGGTACGGCTTTCGGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTCATGGACCCCAAAATTCTCCTCCTGGATGAAGCCACCAGTGCCCTAGATGCCGAAAGCGAGTACCTAGTGCAGGATGCCATGGATTCTCTAATGAAGGGAAGAACTGTTCTAGTCATTGCTCATAGATTATCAACGGTCAAAACTGCCGATACTGTAGCGGTTATATCTGACGGCCAAGTAGTTGAGAGTGGCACACACGAAGAGCTTCTCAGCAAGAATGGTGTCTATACTGCGTTAGTCAGGAGGCAACTGCAGACAGCAAAAACCGAAGATGTAGTTTAG 1902 0.4516 MNGLRGERAPLLEAERGGRGKRDGASADQVSDLEHGDGVPAANVGFFRVFSLAKPEAGNLVIGTGALLIAATSSILVQKYGGKIIDIVSGDLRTQEQRDEALDAVKNTIIEIFLIVFIGSICTALRAWLFSSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLATALMGLSFMFATSWKLTLLALAVVPVISVAVRKFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEISRYSEKVSETLSLGLKQAKVVGLFSGGLNAASTLSVIIVVIYGASLTIKGAMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRESSMPKPGNKCPLGDQDGEVELDDVWFSYPSRPNHMVLKGITIKLLPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLVEISHRHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDEVDIENAAKMANAHEFISKFPEKYKTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVESGTHEELLSKNGVYTALVRRQLQTAKTEDVV 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61834g00001 633 CDD ABC_6TM_AtABCB27_like 63 359 - -
Stsc61834g00001 633 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524|GO:0016887
Stsc61834g00001 633 Gene3D ABC transporter type 1, transmembrane domain 112 382 IPR036640 GO:0005524|GO:0016020
Stsc61834g00001 633 SMART AAA_5 412 606 IPR003593 GO:0016887
Stsc61834g00001 633 MobiDBLite consensus disorder prediction 9 30 - -
Stsc61834g00001 633 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Stsc61834g00001 633 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Stsc61834g00001 633 MobiDBLite consensus disorder prediction 1 34 - -
Stsc61834g00001 633 Gene3D - 383 629 IPR027417 -
Stsc61834g00001 633 FunFam ABC transporter B family member 25 383 625 - -
Stsc61834g00001 633 SUPERFAMILY ABC transporter transmembrane region 48 366 IPR036640 GO:0005524|GO:0016020
Stsc61834g00001 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 623 IPR027417 -
Stsc61834g00001 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 622 IPR003439 GO:0005524
Stsc61834g00001 633 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc61834g00001 633 FunFam ABC transporter B family member 25 112 382 - -
Stsc61834g00001 633 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 45 628 IPR039421 -
Stsc61834g00001 633 Pfam ABC transporter transmembrane region 61 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc61834g00001 633 PIRSF ABC_prm/ATPase_B 16 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61834g00001 Stsc-Chr61834 5054 10399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61834g00001 113 623 Calmodulin-binding Proteins AT2G36910 40.270 1.33e-104 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61834g00001 - - var:108320153 1091.26