Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61812g00001 ATGTCAATGGCAATGGAGACTTCAAATCTGTTCAAGCTGCCATTGATTCCATTCCCGAAGGCAATTCCAATTGGGTCATTCTCCATGTTAGGAAAGGAGTCTACAGAAAAGGTGCACATACCAAAGACCAAGCGTTACATATTCATGAGAGGGAATGGAAAGGGAAGAACAGCTATAGTTTGGTCTCAAAGCTCCTCAGACAACATTGCATCTGCTACCTTCAAAGTTGAAGCTCCTGATTTCATTGCATTTGGAATTAGCTTCAAGAATGAGGCACCCACCGGTATTGCTTATACCTCACAGAATCAATCGGTGGCAGCATATGTGGCTGCAGATAAAGTTGCATTTTACCATTGTGCATTTTTCAGTACCCATAACACACTCTTTGATTACAAAGGCAGACACTACTATGAGTCTTGCTACATTCAAGGCTCAATTGATTTCATTTTTGGGCGTGGCAGATCCATCTTTGAGGGTTGTGAGATTTTTGTGATTGATGACAAAAGGGTAACGATTCATGGGTCAATCACAGCACAAAACAGAGAGAGTGAACGTGAGATAAGTGGATTCATATTCATGAGATGCAAGGTTTATGGCATTGGTGGGGTGTATCTAGGAAGGGCTAAGGGTCCTTATTCTAGGGCCATTTTTGCTCAATCTTATCTCTCCAAGACTGTTCTTCCTCAGGGGTGGACCAATTGGAGCTATGAAGGTTCCACAAAGAATCTGTACCATGCTGAGTACAAGTGCCATGGACCAGGGGCCATAACGGAGGGAAGAGCTCCATGGGCAAGACAACTTACTGATCAACAAGTTGCTTCATTCTTGTCCGTTGATTACATCGATGGCAAGAATTGGTTGCCAGCCTGGCACTAA 876 0.4349 MSMAMETSNLFKLPLIPFPKAIPIGSFSMLGKESTEKVHIPKTKRYIFMRGNGKGRTAIVWSQSSSDNIASATFKVEAPDFIAFGISFKNEAPTGIAYTSQNQSVAAYVAADKVAFYHCAFFSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRSIFEGCEIFVIDDKRVTIHGSITAQNRESEREISGFIFMRCKVYGIGGVYLGRAKGPYSRAIFAQSYLSKTVLPQGWTNWSYEGSTKNLYHAEYKCHGPGAITEGRAPWARQLTDQQVASFLSVDYIDGKNWLPAWH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61812g00001 291 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 287 - -
Stsc61812g00001 291 SUPERFAMILY Pectin lyase-like 35 289 IPR011050 -
Stsc61812g00001 291 Gene3D - 33 291 IPR012334 -
Stsc61812g00001 291 FunFam Pectinesterase 30 291 - -
Stsc61812g00001 291 ProSitePatterns Pectinesterase signature 2. 142 151 IPR033131 -
Stsc61812g00001 291 Pfam Pectinesterase 35 283 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61812g00001 Stsc-Chr61812 5545 7339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61812g00001 36 287 Carbohydrate Esterase AT1G05310 40.541 1.10e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61812g00001 - - lja:Lj6g3v1915720.1 469.544