Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc617g00006 ATGGCTGCCATTGCCAAAGCTTCTTTAAACTTGTTATCATTCCTTTCTCTCCTTGTCATCTTCACTTCTCTAGCCACCTCTCAACCAGATTTTGTACACTCTATCTGTAAAGACAACAATGGTAACTACACAGCTAACAGTACCTACGGTTCAAACCTCAATACCCTCTTGTCCAGCCTCTCTTCTGACATTGCAACCAGCAACAATTTCCGTTTCTACAATATCTCCAACGGCGAAAACACAGACAGAGTTAACCTGATTTGGATGTGCAGAGGAGATGTTACTAAAGACGATTGCCTTAGCTGTTTGAACAACTCAAGAATCCTTCTGCCAGAGGTTTGTCCAAACCAGAAGGAGGCAACAGGGTTTTATGATTACTGCATGTTGCGATACTCGAACCAGTCCATATTTGGGATCCTGGATTCCAGTAATTTGTGGGCGATACATAACAACAGGAATGTAAAGGATGTGAATGAGTTCAACCAAGTTGCTGGAAACTTGGTGCAAAGTCTAAAAAGCAAAGCTGCTGCAGTTTCTGGTGATTCGCTGGTCAAGTTTGCTGCAGGAAAAGCCCAAGTAGGATCCGGATTTGAAGCCGTTACGGTTTATGCTCATGTACAGTGCACTAATGATCTGTCAGAGCTACAATGCAATAATTGCTTGGATGAAGAAATCTCCTACATCCCAACATGCTGTAATGGAACGATCCGTGCTAGAGTTTTTACCCCCAGTTGTAATCTTAGATACGACACCACATCTTACTTTGATACTCTAAACCACGATTTGCCAGCTCAACCATCACCTTCTCCTACTCCAACTCCATCATCCACTACTGATGCCACTGCTACGCCCAAACAAGGAAAGAGCAAGTCATCATCAGCAACTGTGATTGCCATAGTTGTGCCGGTCGTCTCCCTTGTTATTGTGCTTCTCATCACCTTTGTCTGTATCTATTTCAGAAGGAAGAAGAAACCAACAAAGTATTCTCAAAGTCAAGGTGCATTGGAAGCTGACTGCGAAATTGAATCTACTGAGACATTACAATTCGACTTTCAAACCATGATGGAGGCTACAAATAACTTCTCAGTTGCAAATAAACTTGGAGAAGGTGGATTTGGACTTGTCTACAAGGGTAGGCTACCAAATGGCGAAGAGGTTGCTATCAAAAGATTGTCTAGGAATTCTCAGCAAGGAGATATAGAATTCAAGAATGAGCTGCTATTGGTAGCAAAGCTTCAACATCGAAATTTGGCAAGGCTACTTGGCTTTTGTTTGGAAACAGGAGAGAGGATGCTGGTCTACGAGTTTCTTCCCAATAAAAGCCTTGATTACTTCATATGTGATCCAATCAAGCGTTTGCTTTTGGATTGGGAAGGACGCTATAAGATTATAGTTGGAATCGCTCGAGGTCTTCTCTATCTTCACGAGGATTCTCAACTACGTATCATCCATCGTGATCTAAAAGCAAGTAACATACTCTTGGATGATAATATGAACGCAAAGATATCAGACTTTGGCATGGCAAGGTTATTTGTTGAGGATCAAACTCAAGGAAACACACTTAGAGTAGTTGGAACCTACGGATATATGGCACCTGAATATGCATCGAATGGACATTTTTCAATAAAATCAGATGTATTTAGTTTCGGTGTACTGCTCCTTGAGATAGTAAGCGGACACAAAAATGGAGACATCCACAATGGCGAGTATGCAGAACATCTAATAAGCTTTATATGGAGAAAATGGAGGGAAGGTTCTGACTCAGATATTGTAGATCCAACAATGGATAGTAGATTCAGAAATCAAATAATGAGATGCATCCATATCGGGCTGTTATGCGTTCAAGAAAATGTAGCTGATAGACCAAGCATGGCTACGGTTGCAGTGATGCTTAATAGCGACTCCCTCACTCTTCCAATGCCCTCAAGAGCAGCATATGTTGTTATGAATAATGCTGGATATTTATCAAATAGCGAAAGATTAGGTGAATCAAGAAACTATGCTCTGCAAGAATCATCAGGCGCAAATGAGGCTTCGATTACTGAGCTCGATCCTCGTTAG 2061 0.4153 MAAIAKASLNLLSFLSLLVIFTSLATSQPDFVHSICKDNNGNYTANSTYGSNLNTLLSSLSSDIATSNNFRFYNISNGENTDRVNLIWMCRGDVTKDDCLSCLNNSRILLPEVCPNQKEATGFYDYCMLRYSNQSIFGILDSSNLWAIHNNRNVKDVNEFNQVAGNLVQSLKSKAAAVSGDSLVKFAAGKAQVGSGFEAVTVYAHVQCTNDLSELQCNNCLDEEISYIPTCCNGTIRARVFTPSCNLRYDTTSYFDTLNHDLPAQPSPSPTPTPSSTTDATATPKQGKSKSSSATVIAIVVPVVSLVIVLLITFVCIYFRRKKKPTKYSQSQGALEADCEIESTETLQFDFQTMMEATNNFSVANKLGEGGFGLVYKGRLPNGEEVAIKRLSRNSQQGDIEFKNELLLVAKLQHRNLARLLGFCLETGERMLVYEFLPNKSLDYFICDPIKRLLLDWEGRYKIIVGIARGLLYLHEDSQLRIIHRDLKASNILLDDNMNAKISDFGMARLFVEDQTQGNTLRVVGTYGYMAPEYASNGHFSIKSDVFSFGVLLLEIVSGHKNGDIHNGEYAEHLISFIWRKWREGSDSDIVDPTMDSRFRNQIMRCIHIGLLCVQENVADRPSMATVAVMLNSDSLTLPMPSRAAYVVMNNAGYLSNSERLGESRNYALQESSGANEASITELDPR 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc617g00006 686 ProSiteProfiles Gnk2-homologous domain profile. 31 136 IPR002902 -
Stsc617g00006 686 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 136 - -
Stsc617g00006 686 Pfam Protein tyrosine and serine/threonine kinase 363 627 IPR001245 GO:0004672|GO:0006468
Stsc617g00006 686 Gene3D Transferase(Phosphotransferase) domain 1 437 638 - -
Stsc617g00006 686 FunFam cysteine-rich receptor-like protein kinase 10 437 638 - -
Stsc617g00006 686 SUPERFAMILY Protein kinase-like (PK-like) 344 631 IPR011009 -
Stsc617g00006 686 MobiDBLite consensus disorder prediction 274 288 - -
Stsc617g00006 686 CDD STKc_IRAK 367 632 - -
Stsc617g00006 686 FunFam Cysteine-rich receptor-like protein kinase 10 144 254 - -
Stsc617g00006 686 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 686 - -
Stsc617g00006 686 FunFam Cysteine-rich receptor-like protein kinase 10 321 436 - -
Stsc617g00006 686 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Stsc617g00006 686 SMART serkin_6 361 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc617g00006 686 Gene3D - 142 254 IPR038408 -
Stsc617g00006 686 Gene3D - 28 135 IPR038408 -
Stsc617g00006 686 MobiDBLite consensus disorder prediction 260 288 - -
Stsc617g00006 686 Pfam Salt stress response/antifungal 36 134 IPR002902 -
Stsc617g00006 686 Pfam Salt stress response/antifungal 153 251 IPR002902 -
Stsc617g00006 686 ProSiteProfiles Gnk2-homologous domain profile. 142 254 IPR002902 -
Stsc617g00006 686 Gene3D Phosphorylase Kinase; domain 1 322 436 - -
Stsc617g00006 686 ProSiteProfiles Protein kinase domain profile. 361 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc617g00006 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc617g00006 Stsc-Chr617 20104 23116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc617g00006 29 686 Receptor kinase-like Gene Family AT4G21410 47.917 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc617g00006 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc617g00006 - - gmx:100782266 806.979