Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc617g00005 ATGGCTGCCATTGCCAAAGCTTCTTTAAACTTGTTATCATTCCTTTCTCTCCTTGTCATCTTCACTTCTCTAGCCACCTCTCAACCAGATTTTGTACACTCTATCTGTAAAGACAACAATGGTAACTACACAGCTAACAGTACCTACGGTTCAAACCTCAATACCCTCTTGTCCAGCCTCTCTTCTGACATTGCAACCAGCAACAATTTCCGTTTCTACAATATCTCCAACGGCGAAAACACAGACAGAGTTAACCTGATTTGGATGTGCAGAGGAGATGTTACTAAAGACGATTGCCTTAGCTGTTTGAACAACTCAAGAATCCTTCTGCCAGAGGTTTGTCCAAACCAGAAGGAGGCAACAGGGTTTTATGATTACTGCATGTTGCGATACTCGAACCAGTCCATATTTGGGATCCTGGATTCCAGTAATTTGTGGGCGATACATAACAACAGGAATGTAAAGGATGTGAATGAGTTCAACCAAGTTGCTGGAAACTTGGTGCAAAGTCTAAAAAGCAAAGCTGCTGCAGTTTCTGGTGATTCGCTGGTCAAGTTTGCTGCAGGAAAAGCCCAAGTAGGATCCGGATTTGAAGCCGTTACGGTTTATGCTCATGTACAGTGCACTAATGATCTGTCAGAGCTACAATGCAATAATTGCTTGGATGAAGAAATCTCCTACATCCCAACATGCTGTAATGGAACGATCCGTGCTAGAGTTTTTACCCCCAGTTGTAATCTTAGATACGACACCACATCTTACTTTGATACTCTAAACCACGATTTGCCAGCTCAACCATCACCTTCTCCTACTCCAACTCCATCATCCACTACTGATGCCACTGCTACGCCCAAACAAGGAAAGAGCAAGTCATCATCAGCAACTGTGATTGCCATAGTTGTGCCGGTCGTCTCCCTTGTTATTGTGCTTCTCATCACCTTTGTCTGTATCTATTTCAGAAGGAAGAAGAAACCAACAAAGTATTCTCAAAGTCAAGGTGCATTGGAAGCTGACTGCGAAATTGAATCTACTGAGACATTACAATTCGACTTTCAAACCATGATGGAGGCTACAAATAACTTCTCAGTTGCAAATAAACTTGGAGAAGGTGGATTTGGACTTGTCTACAAGGGTAGGCTACCAAATGGCGAAGAGGTTGCTATCAAAAGATTGTCTAGGAATTCTCAGCAAGGAGATATAGAATTCAAGAATGAGCTGCTATTGGTAGCAAAGCTTCAACATCGAAATTTGGCAAGGCTACTTGGCTTTTGTTTGGAAACAGGAGAGAGGATGCTGGTCTACGAGTTTCTTCCCAATAAAAGCCTTGATTACTTCATATGTGATCCAATCAAGCGTTTGCTTTTGGATTGGGAAGGACGCTATAAGATTATAGTTGGAATCGCTCGAGGTCTTCTCTATCTTCACGAGGATTCTCAACTACGTATCATCCATCGTGATCTAAAAGCAAGTAACATACTCTTGGATGATAATATGAACGCAAAGATATCAGACTTTGGCATGGCAAGGTTATTTGTTGAGGATCAAACTCAAGGAAACACACTTAGAGTAGTTGGAACCTACGGATATATGGCACCTGAATATGCATCGAATGGACATTTTTCAATAAAATCAGATGTATTTAGTTTCGGTGTACTGCTCCTTGAGATAGTAAGCGGACACAAAAATGGAGACATCCACAATGGCGAGTATGCAGAACATCTAATAAGCTTTGTAAGACTCCTTTCAAGTACCAATTTCTTAACCTTTTAA 1770 0.4141 MAAIAKASLNLLSFLSLLVIFTSLATSQPDFVHSICKDNNGNYTANSTYGSNLNTLLSSLSSDIATSNNFRFYNISNGENTDRVNLIWMCRGDVTKDDCLSCLNNSRILLPEVCPNQKEATGFYDYCMLRYSNQSIFGILDSSNLWAIHNNRNVKDVNEFNQVAGNLVQSLKSKAAAVSGDSLVKFAAGKAQVGSGFEAVTVYAHVQCTNDLSELQCNNCLDEEISYIPTCCNGTIRARVFTPSCNLRYDTTSYFDTLNHDLPAQPSPSPTPTPSSTTDATATPKQGKSKSSSATVIAIVVPVVSLVIVLLITFVCIYFRRKKKPTKYSQSQGALEADCEIESTETLQFDFQTMMEATNNFSVANKLGEGGFGLVYKGRLPNGEEVAIKRLSRNSQQGDIEFKNELLLVAKLQHRNLARLLGFCLETGERMLVYEFLPNKSLDYFICDPIKRLLLDWEGRYKIIVGIARGLLYLHEDSQLRIIHRDLKASNILLDDNMNAKISDFGMARLFVEDQTQGNTLRVVGTYGYMAPEYASNGHFSIKSDVFSFGVLLLEIVSGHKNGDIHNGEYAEHLISFVRLLSSTNFLTF 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc617g00005 589 ProSiteProfiles Gnk2-homologous domain profile. 31 136 IPR002902 -
Stsc617g00005 589 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 136 - -
Stsc617g00005 589 Gene3D Phosphorylase Kinase; domain 1 322 436 - -
Stsc617g00005 589 FunFam Cysteine-rich receptor-like protein kinase 10 144 254 - -
Stsc617g00005 589 Gene3D Transferase(Phosphotransferase) domain 1 437 587 - -
Stsc617g00005 589 Gene3D - 28 135 IPR038408 -
Stsc617g00005 589 Gene3D - 142 254 IPR038408 -
Stsc617g00005 589 Pfam Salt stress response/antifungal 153 251 IPR002902 -
Stsc617g00005 589 Pfam Salt stress response/antifungal 36 134 IPR002902 -
Stsc617g00005 589 SUPERFAMILY Protein kinase-like (PK-like) 344 570 IPR011009 -
Stsc617g00005 589 MobiDBLite consensus disorder prediction 274 288 - -
Stsc617g00005 589 FunFam Cysteine-rich receptor-like protein kinase 10 321 436 - -
Stsc617g00005 589 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Stsc617g00005 589 Pfam Protein tyrosine and serine/threonine kinase 363 561 IPR001245 GO:0004672|GO:0006468
Stsc617g00005 589 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 565 - -
Stsc617g00005 589 MobiDBLite consensus disorder prediction 260 288 - -
Stsc617g00005 589 ProSiteProfiles Protein kinase domain profile. 361 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc617g00005 589 SMART serkin_6 361 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc617g00005 589 ProSiteProfiles Gnk2-homologous domain profile. 142 254 IPR002902 -
Stsc617g00005 589 FunFam Lectin-domain containing receptor kinase A4.3 437 588 - -
Stsc617g00005 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc617g00005 Stsc-Chr617 20104 23116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc617g00005 29 578 Receptor kinase-like Gene Family AT4G21410 48.050 2.70e-163 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc617g00005 PK_Tyr_Ser-Thr 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc617g00005 - - gmx:100782266 699.893