Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc617g00004 ATGGTACTTTCCAGAATGCTATTATTTCTTTGTATCATTGTCATACTCTTACCTCAACCCAAAGCGCAATCAAACTTCCTATATCACTTCTGTATAAATGACAAAGGTAATTACACTGCTAATAGTACCTACAGCAGAAACCTTAACACCCTTTTGTCCAACATTTCTTCCAACAAAAACATTAATTATGGCTTCTACAACTTCTCCTATGGGGAAGACAATGACCGAGTTAACGCGATCGGGCTATGCAGAGGAGATGTTAAGAAAAATGATTGCTTTAGCTGCCTCAATGATTCAAGAGTCCTGCTCACAAGACTGTGTCCAAATCAAAAGGAAGCAATTGGTTGGTATGACTATTGCATGCTTCGCTACTCGAACCGATCATCAATATTTAACAGCATGGAAACTTTACCTAGTTTCTCCATGAGTAACACTGGAAATGCCACATATGTTGATCAGTTCAACCAAGTGCTGGATACCCTTCTAAATGATCTAATAAGCAAGGCTGCATCAGGGAACTCGCAGCAAAAATTCGCTGCATCAAGTGCACAAGGACCAGGCTTCCAAACACTTTATGGTCTTGTGCAGTGTACGCCTGATTTGTCTCAGCAAGAATGCAATACTTGTTTGATTCAGGCTATCACAGGAATCCCAAACTGTTGTGATAGCAAGAAAGGTGCTAGAATTGTGGAACCTAGCTGTAACTTCAGGTATGAGATATACCCCTTCTATGACCTTACAAATGTTCCACCTCCACCAGCACCACCACCAGATTCTGCTTCTCGTCCCTCATCTACATCTACTGATACGGTTTCAACACAAGGAAAGAGCAGCAACACATCACGAAATATAGTAATAGCAATAGTTGTGCCAATTACTGCTTTGGTTATACTGATCATCCTTATCTGCATCTATATAAGAAGGAGGAGGATGCGGTTGCCAAGACAGGTTGAAGCACTCAATGCTCGAAATTCATTGCCAGTTAAAGCTGAAGATAGTGATGAATTTAGATCATCTGAGACATTGCAATTGGACTTTGCCACCATCATCGCCGCTACCAACAACTTTTCTGATGAGAATAAGCTAGGACAAGGTGGATTTGGGCCCGTTTACAAGGGAAGGCTCTCCAATGGACAGGAAGTTGCAGTCAAAAGATTGTCCAGAAATTCTTTGCAGGGAGATTTAGAGTTTAAGAATGAAGTGATGTTAGTGGCCAAGCTTCAGCACCGAAACTTGGTTAGGCTACTTGGCTTTTGTTTGGAAAGAAGCGAAAGGTTACTGATTTATGAATATGTTCCCAATAAAAGCCTTGATTTCTTCATATTTGACCAAATCAAACGTGCACAACTGGATTGGAAAAGAAGGTACAAAATCATAGGAGGCATTGCTAGAGGTTTACTTTACCTTCACGAGGATTCCCGCTTGAGAATCATTCATCGTGATCTCAAAGCAAGCAACATTCTTTTAGACGCAGAAATGAACCCAAAAATATCTGATTTCGGTTTGGCAAGACTGTTTGCCGTGGATCAAACTCAAGGCAACACAAGTAGAATTGTTGGAACTTATGGATATATGGCGCCAGAGTATGCTTTTCATGGACAATTTTCAACAAAGTCCGACGTTTACAGTTTCGGCGTACTGGTTCTAGAGATTGTAAGTGGCCATAAGAACAGTGGTGTTCGTCGAGGGGAGAACACAGAGGACATAGTGAGCTTTGCATGGAGAAGCTGGAGGGAAGGGACAGCCTCAGACATTGTTGATCCGACAATCACTGATGGATCAAGAAATGAAATAATGAGATGCATCCACATTGGGTTGCTTTGTGTTCAGGAAAATGTAGGTGACAGACCAAGCATGGCTTCAGTTGTAATCATGCTTAACAGCCACTCTGTTACTCTGCCATTGCCTTCACAGCCTTCTCTTGTGATTCAAAATAGAAGCTTATCAGACATCTATTCAGAAGAGTACAATTCCGAGACAAGAGGTTCAACGGAATCAGGTAACCAATCTGTTCAAGCATCGGTGAATGAAGCTTCGATTACTGAGCCATTTCCCCGCTAG 2061 0.4168 MVLSRMLLFLCIIVILLPQPKAQSNFLYHFCINDKGNYTANSTYSRNLNTLLSNISSNKNINYGFYNFSYGEDNDRVNAIGLCRGDVKKNDCFSCLNDSRVLLTRLCPNQKEAIGWYDYCMLRYSNRSSIFNSMETLPSFSMSNTGNATYVDQFNQVLDTLLNDLISKAASGNSQQKFAASSAQGPGFQTLYGLVQCTPDLSQQECNTCLIQAITGIPNCCDSKKGARIVEPSCNFRYEIYPFYDLTNVPPPPAPPPDSASRPSSTSTDTVSTQGKSSNTSRNIVIAIVVPITALVILIILICIYIRRRRMRLPRQVEALNARNSLPVKAEDSDEFRSSETLQLDFATIIAATNNFSDENKLGQGGFGPVYKGRLSNGQEVAVKRLSRNSLQGDLEFKNEVMLVAKLQHRNLVRLLGFCLERSERLLIYEYVPNKSLDFFIFDQIKRAQLDWKRRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDAEMNPKISDFGLARLFAVDQTQGNTSRIVGTYGYMAPEYAFHGQFSTKSDVYSFGVLVLEIVSGHKNSGVRRGENTEDIVSFAWRSWREGTASDIVDPTITDGSRNEIMRCIHIGLLCVQENVGDRPSMASVVIMLNSHSVTLPLPSQPSLVIQNRSLSDIYSEEYNSETRGSTESGNQSVQASVNEASITEPFPR 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc617g00004 686 MobiDBLite consensus disorder prediction 249 277 - -
Stsc617g00004 686 Pfam Salt stress response/antifungal 146 240 IPR002902 -
Stsc617g00004 686 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Stsc617g00004 686 MobiDBLite consensus disorder prediction 261 277 - -
Stsc617g00004 686 MobiDBLite consensus disorder prediction 655 686 - -
Stsc617g00004 686 FunFam Cysteine-rich receptor-like protein kinase 10 138 243 - -
Stsc617g00004 686 CDD STKc_IRAK 362 627 - -
Stsc617g00004 686 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Stsc617g00004 686 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 682 - -
Stsc617g00004 686 Gene3D - 22 128 IPR038408 -
Stsc617g00004 686 Gene3D - 137 243 IPR038408 -
Stsc617g00004 686 MobiDBLite consensus disorder prediction 655 679 - -
Stsc617g00004 686 ProSiteProfiles Gnk2-homologous domain profile. 136 243 IPR002902 -
Stsc617g00004 686 Pfam Protein tyrosine and serine/threonine kinase 359 623 IPR001245 GO:0004672|GO:0006468
Stsc617g00004 686 FunFam cysteine-rich receptor-like protein kinase 10 432 633 - -
Stsc617g00004 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Stsc617g00004 686 ProSiteProfiles Protein kinase domain profile. 356 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc617g00004 686 SUPERFAMILY Protein kinase-like (PK-like) 346 658 IPR011009 -
Stsc617g00004 686 Gene3D Phosphorylase Kinase; domain 1 318 431 - -
Stsc617g00004 686 Gene3D Transferase(Phosphotransferase) domain 1 432 633 - -
Stsc617g00004 686 SMART serkin_6 356 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc617g00004 686 FunFam Cysteine-rich receptor-like protein kinase 10 319 431 - -
Stsc617g00004 686 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc617g00004 Stsc-Chr617 11488 14457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc617g00004 5 686 Receptor kinase-like Gene Family AT4G21410 49.713 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc617g00004 PK_Tyr_Ser-Thr 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc617g00004 - - gmx:113000773 944.88