Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc617g00003 ATGGCTATGGTACCTTCAAGTTCAAGACTGATTTCTCTACTTCTTTCTCTTCTGCTTCTTATGCTTGTATCTCACACTACTGCCCAGCCAAGCTTCCTGTACCATTTCTGCATGAATGATAAAGGAAACTACACAGAAAACAGCGCCTACCACACCAACCTCAACACTCTTCTGTCCACTTTGTCTTCCGATACACAAGTTGATTATGGCTTCTACAACTTCTCTCAGGGGCAAGGCTCTGACAAAGTTAATGCAATTGGGCTGTGTAGAGGAGATGTTAAGCCTGATTCTTGCCGCAGTTGTCTCAATGATTCCAGAGTCCTTCTGACACACCGCTGTCCGAATCAGAAGGAAGCTATAGGTTGGTATGACGACTGCATGCTGCGCTACTCGAACCGGTCCATATTTGACACCATGGAACCTGACCCTACCTACCTTCTGTGGGTTGGAAAAAATGCAACTGATATGAATCAGTTCATTCAAGTGCTTAGGGACTTGCTTGATAGTCTTAGAACAAAAGCAGCATCAGGTGATTCCCTTAAAAAGTATGCAGCAGGAAGCACGGCCGGGCCAAGCTTCCAGACTATATTTGCTCTTCTGCAATGCACACCTGATTTATCAGAGCAAGATTGTGATGATTGCTTGGTAAGGGCCACCTCAGATATCAATGATCGTTGTTATGGCTTGACAAATTGCAGAATTGGAAAACCAAGCTGCAATCTTAGATTTGATGCTTCACCCTTCTTTGACTCTACAGCAGATGCTTCTCCGCCGTCCCCATCAAAAGCATCTCCACCTCCTCCAGTCACCAATACCAACTCCACTTCTACCAAAGGAAAGAGCAACTCAACAGTTATTGTCATTGCAGTGGCAGTGCCAACTTTTGTTATTTTTATACTGCTCACCTCTGTCTGCATCTTCATAAGAGCAAGGAAGCGTAAGAGAAGTTATCACAACCACAATGACACTGAAGTTAACAATGAAATTGAACCTACTGATACATTGCAATTCAACTTTGACACCATCAGAACGGCTACAAATAACTTTTCAGAAGAAAATAAGCTAGGACGAGGAGGTTTTGGACCTGTTTTCAAGGGCAAGCTTTCTAATGGAAGAGAAATTGCAGTCAAAAGGCTGTCAATGAATTCAGGACAAGGAGATACAGAATTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACCGCAATTTAGTTAGGCTACTTGGTTTTTGCTTGGAAAGAAAAGAAAGGTTACTGGTTTATGAGTTTGTTCCTAATAAAAGTCTTGATTACTTCATATTTGATCCAATCAAGCGTGCTCATCTGGATTGGGAAAAGCGATACAAAATCATTGGAGGCATAGCTAAAGGCCTTCTTTATCTTCATGAGGATTCGCGCCTGCGTATTATTCATCGTGACCTTAAAGCAAGTAACATTCTTTTAGACGAAGAAATGAATCCGAAAATATCAGATTTTGGCATGGCAAGATTGTTTCTTGTGGATCAAACCCAAGGAAACACAAATAGAGTGGTTGGAACATATGGATACATGGCACCTGAGTATGTAATGCAAGGACAATTCTCTGTGAAGTCAGATGTCTTTAGTTTCGGCGTCATGCTTCTAGAGATAGTAAGCGGCCAGAAAAATAGTGGCTTCCACAATGGAGATGATGTGGAAGACCTAATAAGCTTTGCCTGGAAAAATTGGAGGGAGGGAACAGCATCAAACATTATAGATCACACAATGAATAATGGTTCAAGAAATGAAATATTGAGATGTATCCACATTGGTTTACTTTGTGTTCAGGAAAATTTAGCTGATAGACCAAACATGGCTTCTATTGTACTCATGCTTAACAGCCACTCTCTCACCCTTCCAGTGCCATCAAAGCCTCCATTTCTTATGAATAGCAGAGCTTTATCAAGTATTCCATCATGGGAGTATAGTTCAAGGTCAACAGATTGA 1968 0.4151 MAMVPSSSRLISLLLSLLLLMLVSHTTAQPSFLYHFCMNDKGNYTENSAYHTNLNTLLSTLSSDTQVDYGFYNFSQGQGSDKVNAIGLCRGDVKPDSCRSCLNDSRVLLTHRCPNQKEAIGWYDDCMLRYSNRSIFDTMEPDPTYLLWVGKNATDMNQFIQVLRDLLDSLRTKAASGDSLKKYAAGSTAGPSFQTIFALLQCTPDLSEQDCDDCLVRATSDINDRCYGLTNCRIGKPSCNLRFDASPFFDSTADASPPSPSKASPPPPVTNTNSTSTKGKSNSTVIVIAVAVPTFVIFILLTSVCIFIRARKRKRSYHNHNDTEVNNEIEPTDTLQFNFDTIRTATNNFSEENKLGRGGFGPVFKGKLSNGREIAVKRLSMNSGQGDTEFKNEVLLVAKLQHRNLVRLLGFCLERKERLLVYEFVPNKSLDYFIFDPIKRAHLDWEKRYKIIGGIAKGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKISDFGMARLFLVDQTQGNTNRVVGTYGYMAPEYVMQGQFSVKSDVFSFGVMLLEIVSGQKNSGFHNGDDVEDLISFAWKNWREGTASNIIDHTMNNGSRNEILRCIHIGLLCVQENLADRPNMASIVLMLNSHSLTLPVPSKPPFLMNSRALSSIPSWEYSSRSTD 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc617g00003 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Stsc617g00003 655 SUPERFAMILY Protein kinase-like (PK-like) 337 647 IPR011009 -
Stsc617g00003 655 ProSiteProfiles Gnk2-homologous domain profile. 32 135 IPR002902 -
Stsc617g00003 655 CDD STKc_IRAK 355 620 - -
Stsc617g00003 655 FunFam cysteine-rich receptor-like protein kinase 10 425 626 - -
Stsc617g00003 655 FunFam Cysteine-rich receptor-like protein kinase 10 310 424 - -
Stsc617g00003 655 Gene3D Phosphorylase Kinase; domain 1 309 424 - -
Stsc617g00003 655 Pfam Protein tyrosine and serine/threonine kinase 352 617 IPR001245 GO:0004672|GO:0006468
Stsc617g00003 655 ProSiteProfiles Gnk2-homologous domain profile. 141 248 IPR002902 -
Stsc617g00003 655 MobiDBLite consensus disorder prediction 252 279 - -
Stsc617g00003 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 637 - -
Stsc617g00003 655 SMART serkin_6 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc617g00003 655 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc617g00003 655 FunFam Cysteine-rich receptor-like protein kinase 10 143 248 - -
Stsc617g00003 655 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 135 - -
Stsc617g00003 655 Gene3D Transferase(Phosphotransferase) domain 1 425 626 - -
Stsc617g00003 655 Gene3D - 144 248 IPR038408 -
Stsc617g00003 655 Gene3D - 29 134 IPR038408 -
Stsc617g00003 655 Pfam Salt stress response/antifungal 37 132 IPR002902 -
Stsc617g00003 655 Pfam Salt stress response/antifungal 152 244 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc617g00003 Stsc-Chr617 7921 10821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc617g00003 40 643 Receptor kinase-like Gene Family AT4G21410 52.903 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc617g00003 PK_Tyr_Ser-Thr 8.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc617g00003 - - gmx:102662291 993.416