Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61769g00001 ATGTTTATAAGGGATNNNNNNNNNNGTTTTACAGCTTCCAAACCAGGATCAGGAATGGTTGTTGCTGTGAAGAAACTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAAGTTAACTACCTGGGACAACTTCACCATCAAAATCTGGTTAAACTAATTGGCTACTGTGTGGAAGGAGAAGATCGGTTGTTGGTGTATGAATTCATGCCCAAAGGAAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAGCCGCTTTCATGGTCACTGAGGATGAAAGTGGCCATTGGTGCTGCCAGAGGACTAAGTTTTCTTCACAATGCCAAATCACAAGTCATATACCGTGATTTCAAAGCTTCTAATATCCTACTAGATGCTGAGTTCAATGCAAAACTCTCTGATTTTGGCTTAGCAAAGGCTGGTCCTACTGGTGATAGAACTCACGTCTCTACTGAAGTTATGGGTACTCGTGGATATGCCGCACCTGAATATGTTGCAACAGGGCGGCTAACAGCCAAAAGTGATGTATATAGCTTTGGGGTTGTGTTGCTTGAGCTGTTGTCTGGAAGACGTGCTGTTGATAGAACAAAAGCTGGTGTGGAGCAGGACCTTGTAGACTGGGCAAAACCATATTTAGGTGACAAAAGAAAACTATTTCGGATTATGGACACCAAGCTCGAGGGTCAATACCCACAGAAAGGAGCCTACATGGCTGCTACTCTTGCTTTAAAATGCCTTGATCGTGAACCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGACACCCTTGAGCAGATAGAAGTCCCCAAAACTGCAGCGCGAAACTCTCAATCAGGGCAGAAGAGAGTACATGTTCCTCCAAGCCCAAGGAAGTCTCCTGCACAGAACCCGTCCCCTATGAATGTTACTCGAACTTCATACCCATTGCCACCTCGCCGAGAATCTCCTCATGTACACTAA 969 0.4458 MFIRDXXXXFTASKPGSGMVVAVKKLKPEGFQGHKEWLTEVNYLGQLHHQNLVKLIGYCVEGEDRLLVYEFMPKGSLENHLFRRGPQPLSWSLRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTEVMGTRGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGVEQDLVDWAKPYLGDKRKLFRIMDTKLEGQYPQKGAYMAATLALKCLDREPKARPPMTEVLDTLEQIEVPKTAARNSQSGQKRVHVPPSPRKSPAQNPSPMNVTRTSYPLPPRRESPHVH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61769g00001 322 CDD STKc_IRAK 17 269 - -
Stsc61769g00001 322 Pfam Protein tyrosine and serine/threonine kinase 14 266 IPR001245 GO:0004672|GO:0006468
Stsc61769g00001 322 PIRSF TyrPK_CSF1-R 233 312 - -
Stsc61769g00001 322 PIRSF TyrPK_CSF1-R 10 89 - -
Stsc61769g00001 322 PIRSF TyrPK_CSF1-R 86 194 - -
Stsc61769g00001 322 SUPERFAMILY Protein kinase-like (PK-like) 16 266 IPR011009 -
Stsc61769g00001 322 FunFam Probable serine/threonine-protein kinase PBL8 72 285 - -
Stsc61769g00001 322 PANTHER OS01G0588500 PROTEIN-RELATED 12 270 - -
Stsc61769g00001 322 Gene3D Phosphorylase Kinase; domain 1 11 72 - -
Stsc61769g00001 322 ProSiteProfiles Protein kinase domain profile. 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61769g00001 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 115 127 IPR008271 GO:0004672|GO:0006468
Stsc61769g00001 322 MobiDBLite consensus disorder prediction 273 322 - -
Stsc61769g00001 322 Gene3D Transferase(Phosphotransferase) domain 1 73 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61769g00001 Stsc-Chr61769 6205 9386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61769g00001 17 266 Glycoside Hydrolase AT3G07070 55.731 1.93e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc61769g00001 PK_Tyr_Ser-Thr 9.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61769g00001 - - gmx:100809778 538.11