Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61748g00003 ATGAGTTCAACTCTGACTAACCATCATCTTCTACTGTGTTCAACCTCCACCGCTTCAGCCGAACAACACAAACCCCTAACCAACTTTCCCGCCAAATCACAACGCCCAACTTTCACAAACCTTAACTTCCGCCCCAACCACCACCATCCTCCTCCTCCTCCTTCAGGTCCAAATCTGGTAGTTGGAAGGAGAGGGCTAATATCCATAGCCACTTTGCCATGTCTGACTCAGATTATGGGTTGTCTCCAAGCCAATGCCGCACAGTCTAGTACAAAGGAATATCTTCTCATTAAAGAAGAAGTAAGGAAGGTATTGTCGAAGGGAAAAGCTGCGGGCGTGCTTCGTTTGGTTTTCCATGATGCGGGGACCTTTGACTTGGATGACAAAACAGGTGGTATGAATGGTTCTATAGTTTATGAACTTGAAAGACCTGAAAATTCTGGCCTAAAAAAATCAATAAAGGTTCTGCAGAAAGCAAAGATTCAGATAGATGCTATCCAACCAGTATCCTGGGGGGACATGATCGCTGTTGCTGGTGCCGAAGCAGTTGAAATATGTGGAGGTCCATCGATCCAAGTTTCTTTGGGCAGACTAGATTCAGCGGAGCCTGACCCTGAAGGGAAACTTCCTGAGGAATCTCTCAATGCTTCCAGTTTGAAGAAATGCTTCCAGAGAAAAGGCTTTTCAACACAAGAACTTGTAGCTTTGTCTGGTGCCCACACTCTTGGAAGTAAAGGTTTTGGAAGCCCAACTTCTTTTGACAATGCATACTATAAGATTCTTTTGGAGAAGCCTTGGGCAAATCCAGGTGGTATGTCAAGTATGATTGGCCTTCCTTCGGATCACGCACTTGTTGAGGATGAGGAATGCTTAAGTTGGATCAAGAAATACGCAGAAAATGAGAACATGTTCTTTGAAGATTTCAAGAATGCATATGTCAAGCTGGTGAATTCCGGTGTGAGGTGGAATAGCTTATAA 978 0.4438 MSSTLTNHHLLLCSTSTASAEQHKPLTNFPAKSQRPTFTNLNFRPNHHHPPPPPSGPNLVVGRRGLISIATLPCLTQIMGCLQANAAQSSTKEYLLIKEEVRKVLSKGKAAGVLRLVFHDAGTFDLDDKTGGMNGSIVYELERPENSGLKKSIKVLQKAKIQIDAIQPVSWGDMIAVAGAEAVEICGGPSIQVSLGRLDSAEPDPEGKLPEESLNASSLKKCFQRKGFSTQELVALSGAHTLGSKGFGSPTSFDNAYYKILLEKPWANPGGMSSMIGLPSDHALVEDEECLSWIKKYAENENMFFEDFKNAYVKLVNSGVRWNSL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61748g00003 325 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 71 323 IPR044831 GO:0004601|GO:0034599
Stsc61748g00003 325 MobiDBLite consensus disorder prediction 26 57 - -
Stsc61748g00003 325 FunFam Adenylate/guanylate cyclase 210 312 - -
Stsc61748g00003 325 FunFam L-ascorbate peroxidase 100 217 - -
Stsc61748g00003 325 Gene3D - 98 319 - -
Stsc61748g00003 325 Gene3D Peroxidase, domain 2 210 312 - -
Stsc61748g00003 325 PRINTS Haem peroxidase superfamily signature 187 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 PRINTS Haem peroxidase superfamily signature 110 124 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 PRINTS Haem peroxidase superfamily signature 232 247 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 PRINTS Haem peroxidase superfamily signature 169 186 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 MobiDBLite consensus disorder prediction 26 44 - -
Stsc61748g00003 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 232 242 IPR019793 -
Stsc61748g00003 325 ProSiteProfiles Plant heme peroxidase family profile. 110 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 Pfam Peroxidase 99 300 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 PRINTS Plant ascorbate peroxidase signature 226 247 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 PRINTS Plant ascorbate peroxidase signature 208 225 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 PRINTS Plant ascorbate peroxidase signature 128 138 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 PRINTS Plant ascorbate peroxidase signature 187 199 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 PRINTS Plant ascorbate peroxidase signature 168 186 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 PRINTS Plant ascorbate peroxidase signature 110 125 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 PRINTS Plant ascorbate peroxidase signature 296 320 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc61748g00003 325 ProSitePatterns Peroxidases active site signature. 110 121 IPR019794 GO:0004601
Stsc61748g00003 325 SUPERFAMILY Heme-dependent peroxidases 91 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61748g00003 Stsc-Chr61748 8743 12979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61748g00003 110 323 Peroxidase AT4G16270 30.935 9.70e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61748g00003 K00434 - gmx:100792735 474.937