Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61730g00003 AAACACCTTTCAGAGATATGTAAAGCTGAGTATCCAAGACTTGTTAGATACTGCTTATGGTTATTAGCTGAGCTTGCTGTCATAGCTGCAGACATACCCGAAGTGATTGGAACGGCGTTTGCACTGAACATACTATTCAACATCCCAGTTTGGGGAGGAGTTCTAGTGACAGGGTGCAGTACTCTCTTGCTTCTTGGTCTCCAGAGATTTGGGATAAGGAAGCTGGAGATGCTGATATCAACGCTGGTATTTGTAATGGCAGCGTGCTTCTTTGGGGAAATGAGTTACGTGAAACCACCAGCATCTGGTGTCTTAAAAGGGATGTTTGTTCCAAAACTCAATGGTCAAGGTGCCACTGCAGATGCCATTGCCCTTTTGGGTGCCCTTATCATGCCGCACAACCTCTTCCTACACTCTGCTCTGGTGCTGTCTAGGAAAGTACCCAATTCAGTTCGTGGTATCAATGAAGCGTGTAGATATTTTCTGATAGAGAGCGGGTTCGCACTCTTTGTGGCATTTCTAATCAACGTTGCAGTGATTTCCGTGTCTGGCACTGTTTGCTCTTCTTCAAATCTTTCTTCAGAAAACGCTGGTCACTGCGACGATCTCACCCTTGACTCTGCTTCCTTTCTTCTCAAGAATGTGTTGGGAAGGTCGAGTTCAACGATTTATGCGATAGCACTGTTAGCTTCAGGACAAAGTTCCGCCATTACAGGAACCTATGCAGGACAGTACATTATGCAGGGTTTCTTGGACTTAAAGATGAAAAGATGGATTAGGAACTTGATGACTAGGACCATTGCCATAGCACCAAGCCTTGTTGTCTCCATTATTGGTGGCTCCTCTGGTGCTGGTCGACTAATCGTCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATTCCGCTCCTTAAGTTTAGTAGCAGTAGTACCAAGATGGGACCTCACAAGAACTCTATGATAATCATTGTGATATCATGGATCCTAGGATTGGGGATCATAGGCATCAATGTGTACTACCTCGTCACTGCCTTCGTGGATTGGCTAATGCATAATGGTTTGCCAAAGGTGGGAAATGTGTTCATTGGGATCATAGTGTTTCCTCTGATGGCAATCTATGTGGGCTCAGTTATATACCTAGCATTCAGAAAAGACAATGTTCAGACATATATAGAGACCAAGAATAACACAGCAATGCAAACCCATGTGGAAAAGGGGTTCATGAATCCTAATGGGGAGTTAGAGTTGAACCATGGGCCTATCAGAGAAGATTTAGCTGATATCCCACTACCTCAATAA 1308 0.4411 KHLSEICKAEYPRLVRYCLWLLAELAVIAADIPEVIGTAFALNILFNIPVWGGVLVTGCSTLLLLGLQRFGIRKLEMLISTLVFVMAACFFGEMSYVKPPASGVLKGMFVPKLNGQGATADAIALLGALIMPHNLFLHSALVLSRKVPNSVRGINEACRYFLIESGFALFVAFLINVAVISVSGTVCSSSNLSSENAGHCDDLTLDSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDLKMKRWIRNLMTRTIAIAPSLVVSIIGGSSGAGRLIVIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVISWILGLGIIGINVYYLVTAFVDWLMHNGLPKVGNVFIGIIVFPLMAIYVGSVIYLAFRKDNVQTYIETKNNTAMQTHVEKGFMNPNGELELNHGPIREDLADIPLPQ 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61730g00003 435 PRINTS Natural resistance-associated macrophage protein signature 292 311 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc61730g00003 435 PRINTS Natural resistance-associated macrophage protein signature 232 251 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc61730g00003 435 PRINTS Natural resistance-associated macrophage protein signature 19 45 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc61730g00003 435 PRINTS Natural resistance-associated macrophage protein signature 122 145 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc61730g00003 435 PRINTS Natural resistance-associated macrophage protein signature 47 66 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc61730g00003 435 PRINTS Natural resistance-associated macrophage protein signature 72 93 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc61730g00003 435 PRINTS Natural resistance-associated macrophage protein signature 260 277 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc61730g00003 435 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 1 394 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc61730g00003 435 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 1 314 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc61730g00003 435 NCBIfam Nramp family divalent metal transporter 5 311 - -
Stsc61730g00003 435 Pfam Natural resistance-associated macrophage protein 1 322 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61730g00003 Stsc-Chr61730 12806 16732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61730g00003 1 435 Inorganic Solute Cotransporters AT1G15960 60.460 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61730g00003 K21398 - gmx:100787785 722.62