Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61711g00002 ATGTCAAACATCACTAGTTGTGATAGTGGGAGCTTCTCCACAGATAACAACACTAACAGCAGAGAAGGAGATGCATCACTATTATTACTTAATAATAATAACAATAAACAGCAATCAGAGTCAGAGATACGTGGTGCTGGTGGTGGTGGTAACTTCCATAGTCCAAATTCTAATTCTTCAACCATCACTAACAATAACAGCAGCAGCAATGCTTCCAACGCAAATTCGCAGCCACAACCGCCACCGCCGCCTCCTAAGAAGAAAAGAAGTCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTCTATCGCCAAACACGCTGGTGACTACAAACCGTTTCATATGTGAGATCTGCAACAAAGGTTTCCAAAGGGATCAGAACCTTCAACTTCACCGGAGAGGCCATAACCTCCCATGGAAGCTTAAACAAAGAAGCAGCAGTGAAGTGCGAAAAAGGGTGTACGTGTGTCCTGAACCCTCATGTGTCCACCACAATCCTTCTCGAGCACTCGGAGATCTCACCGGAATCAAGAAACACTTTAGCAGAAAGCACGGCGACAAGAAGTGGAAGTGTGACAAATGCAACAAGAAATACGCCGTTCATTCTGACTGGAAAGCTCATTCCAAAATCTGTGGTACTAAAGAATACAAATGTGACTGTGGCACCGTCTTTTCCAGAAGAGATAGTTTCATAACCCACAGAGCTTTCTGTGATGCACTTGCTGATGAGAATAACAAAGCGATGAACAATGAAGGAGGAGGAGTAGGACATTTTCCAAAGATAGGTTCCAACTTATTGCAACCATTAATCCCAAACCTAGTTGCATCATTACCAATCACTCGCAATAATAACAATAATAATAGTAGTAATCCACAGATTATTGCTGCTTCTGAATTCAAGCAGCAGCCCCCATCATTCCCTCATCATGAACTCATGCCAATGCCAATGCCAATGCCTGAACAAAAGCCCTTCATCAACAACAACCTAATAAACCCTTCATCACTACCCTCTCTTCAACTGAACTCACCACATTCTTCACTAAACATGTTCGATGATGAGAATGGTGGGGTCCATTTAGCTGCAGGGTTACCCCATATGTCCGCCACGGCATTGCTGCAAAAAGCTGCACAAATTGGTGCAACTACCGTTAGCAACAATAACAACACCACCACAAGCATGGCACCTCCATCATTTGCTTCTTCCAATAATGGCATCATCATGGAACACTTCATGCACAATGCCCAACATGATAATAATAATAATTTCAGTGTGGTGAATAATAACGGGAGCGTTGGAATGAATGGTGTGGAAATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTAGCCAAGATCATTGATCAGAACAATAGAAGCAGTGGATTCAGCATCCCCCCAGTGATGAGTGGTAGGAGTATTAGTAGCACCATTAATATTGGTGGAGCTAAGGGGACTGAGGATGTGATGACTCTGGACTTTCTGGGAATCGGAGGAGGTGGCGGCGGTGGTGTCGGCAACGGCGGAGACGGTGGTGCCCATGGATACTTTGGTATTGGTCCCTTAGCGTAA 1575 0.4406 MSNITSCDSGSFSTDNNTNSREGDASLLLLNNNNNKQQSESEIRGAGGGGNFHSPNSNSSTITNNNSSSNASNANSQPQPPPPPPKKKRSLPGNPDPSAEVIALSPNTLVTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSSEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFSRKHGDKKWKCDKCNKKYAVHSDWKAHSKICGTKEYKCDCGTVFSRRDSFITHRAFCDALADENNKAMNNEGGGVGHFPKIGSNLLQPLIPNLVASLPITRNNNNNNSSNPQIIAASEFKQQPPSFPHHELMPMPMPMPEQKPFINNNLINPSSLPSLQLNSPHSSLNMFDDENGGVHLAAGLPHMSATALLQKAAQIGATTVSNNNNTTTSMAPPSFASSNNGIIMEHFMHNAQHDNNNNFSVVNNNGSVGMNGVEMFNAILDQSKALAKIIDQNNRSSGFSIPPVMSGRSISSTINIGGAKGTEDVMTLDFLGIGGGGGGGVGNGGDGGAHGYFGIGPLA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61711g00002 524 SUPERFAMILY beta-beta-alpha zinc fingers 114 211 IPR036236 -
Stsc61711g00002 524 Gene3D Classic Zinc Finger 169 249 - -
Stsc61711g00002 524 Gene3D Classic Zinc Finger 94 161 - -
Stsc61711g00002 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 137 IPR013087 -
Stsc61711g00002 524 FunFam protein indeterminate-domain 5, chloroplastic-like 169 248 - -
Stsc61711g00002 524 Pfam Zinc-finger double-stranded RNA-binding 115 137 IPR022755 -
Stsc61711g00002 524 SMART c2h2final6 191 211 IPR013087 -
Stsc61711g00002 524 SMART c2h2final6 156 186 IPR013087 -
Stsc61711g00002 524 SMART c2h2final6 115 137 IPR013087 -
Stsc61711g00002 524 MobiDBLite consensus disorder prediction 51 75 - -
Stsc61711g00002 524 MobiDBLite consensus disorder prediction 76 91 - -
Stsc61711g00002 524 MobiDBLite consensus disorder prediction 1 44 - -
Stsc61711g00002 524 FunFam protein indeterminate-domain 12-like 94 162 - -
Stsc61711g00002 524 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Stsc61711g00002 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 57 498 IPR031140 -
Stsc61711g00002 524 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61711g00002 Stsc-Chr61711 9498 13143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61711g00002 58 384 IDZ Gene Family AT3G50700 53.353 5.29e-113 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc61711g00002 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61711g00002 - - gmx:100813556 505.368