Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61664g00001 ATGGATGATAGCGTGGAGATGTTTGCACACGTGGCTGGTTACACTTACAAGTATGAGATGCTTGACAAGGCAACAAATCATTTTGATCCTGCAAACAAATTAGGGGAGGGTGGAGCTGGTTCTGTGTTCAAAGGAATACTACCTCAAGGGAAGATTGTTGCCGTGAAACGACTGTTCTTTACAACACGACAATGGACTGATGGATTCTTCAATGAGGTTAATTTGATAACAGGGATTAGACACAAGAATCTGGCGAAACTTTTAGGGTGCAGTATTGAAGGTCCTGAAAGTCTCTTGGTTTATGAATATGTGCCAAATGGGAGTCTTGATCAAATACTTTTTGGTAAGGACTCAAGAACCGTTTTGACATGGAAGCAACGTTTTAATATCATATGTGGTGTAGCTGAGGCCCTGGCATACCTTCATGGAGGTGCTCAATCAAAGATTATTCACAGAGACATTAAGTCCGCCAACATTTTGCTTGATGAGAATCTTAATCCGAAAGTTGCTGATTTTGGTCTTGCTCGTTTTGTTACCCAAAATAGAAGTCATGTTACCACTGGAGTCGCGGGAACATTAGGATATATGGCTCCTGAATATCTTCTCCAAGGACAACTAACAGAGAAAGCAGATGCCTACGCTTTTGGAGTGGTGGTTGCTGAAATTGTATGTGGCAAGAAAAACAGTATTTATACCGAGGGCTCAGCTTCATTACTCCATGGTGTTTGGAAGAATTATAAGGCACATAACATCACAGCATCAGTTGATCCTGTGCTGAATGGTGAATTTGTGGAACAAGAGGCATCAAATGCTCTCCGAGTTGCTCTTCTTTGCACACAGTCCTCTGTTTCTCTTAGACCATCCATGTCTCAAGTGATTCAGATCCTAACCGAGAAAGACTTTGCTGTTCCCTCCCCCAAGCAACAACCATTCCTAAATTGCACTATGCTGAACGTAGATGACAGAACACTACATGCTACCTCCACCTTCTCCCCTTTACCTTCACCAAAGGGCCCCAACCCCACCCCCACAAGTGCAAGATCCTCTTTCAATACCACCACAGACTCATTTAGTTCAAATAATGCACATGAAATTAATATTGCAATGCCTTCTGATCCAAGGGAGGAGAATAAAAACAACAATAATAAATAA 1152 0.4201 MDDSVEMFAHVAGYTYKYEMLDKATNHFDPANKLGEGGAGSVFKGILPQGKIVAVKRLFFTTRQWTDGFFNEVNLITGIRHKNLAKLLGCSIEGPESLLVYEYVPNGSLDQILFGKDSRTVLTWKQRFNIICGVAEALAYLHGGAQSKIIHRDIKSANILLDENLNPKVADFGLARFVTQNRSHVTTGVAGTLGYMAPEYLLQGQLTEKADAYAFGVVVAEIVCGKKNSIYTEGSASLLHGVWKNYKAHNITASVDPVLNGEFVEQEASNALRVALLCTQSSVSLRPSMSQVIQILTEKDFAVPSPKQQPFLNCTMLNVDDRTLHATSTFSPLPSPKGPNPTPTSARSSFNTTTDSFSSNNAHEINIAMPSDPREENKNNNNK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61664g00001 383 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 15 324 - -
Stsc61664g00001 383 SMART serkin_6 28 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61664g00001 383 Gene3D Phosphorylase Kinase; domain 1 3 103 - -
Stsc61664g00001 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Stsc61664g00001 383 FunFam Cysteine-rich receptor-like protein kinase 2 2 103 - -
Stsc61664g00001 383 Pfam Protein kinase domain 31 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61664g00001 383 MobiDBLite consensus disorder prediction 342 366 - -
Stsc61664g00001 383 CDD STKc_IRAK 34 298 - -
Stsc61664g00001 383 MobiDBLite consensus disorder prediction 327 383 - -
Stsc61664g00001 383 ProSiteProfiles Protein kinase domain profile. 28 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61664g00001 383 SUPERFAMILY Protein kinase-like (PK-like) 14 319 IPR011009 -
Stsc61664g00001 383 Gene3D Transferase(Phosphotransferase) domain 1 104 307 - -
Stsc61664g00001 383 FunFam Cysteine-rich receptor-like protein kinase 2 104 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61664g00001 Stsc-Chr61664 2118 3566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61664g00001 16 321 Receptor kinase-like Gene Family AT1G70520 49.045 6.56e-105 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc61664g00001 Pkinase 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61664g00001 - - ahf:112722338 626.32