Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61641g00001 ATGCCGATCTCTAAGATTGCGATTGGAAATGCTTCTGAGTTGAGGCAAGGCGATGCGCTTAAGGCCGCACTGGCTGAGTTCATCTCAATGCTCATCTTTGTTTTCGCTGGACAAGGCTCCGGCATGGCTTATAATAAGTTGACAAACAATGGCGCAGCAACACCAGCTGGCGTAGTGGCAGCATCATTGTCACATGCATTCGCTCTTTTTGTGGCAGTCTCCGTTGGTACCAACATCTCCGGCGGCCATGTCAACCCTGCTGTCACTTTCGGCGCTTTCATTGGTGGCCACATCACTCTCCTCAGATCCATTCTCTATTGGATTGCTCAGTTGCTTGGCTCCGTTGTTGCTTGCTTGCTCCTTAAATTCGCCACGGCTGGACTCGAAACATCTGCATTTGCACTATCTTCTGGTGTTGGAGCATCGAATGCATTGGTGTTTGAGATTGTGATGACGTTTGGTCTCGTGTACACGGTATATGCAACTGCAGTGGACCCAAAGAAGGGTGACATTGGCATAATTGCTCCCATTGCCATTGGTTTCATTGTGGGTGCTAACATCTTGGCTGGTGGTGCATTTGATGGTGCTTCCATGAACCCAGCTGTGTCTTTTGGGCCTGCTGTTGTTAGCTGGACTTGGACCAACCACTGGGTCTACTGGGCCGGCCCATTCATTGGTTCAGCCATTGCTGCTATTGTCTACGACACTTTCTTTATTAACCACCACACTCATGAACCGCTTCCCGTCACAGATTATTAG 759 0.4941 MPISKIAIGNASELRQGDALKAALAEFISMLIFVFAGQGSGMAYNKLTNNGAATPAGVVAASLSHAFALFVAVSVGTNISGGHVNPAVTFGAFIGGHITLLRSILYWIAQLLGSVVACLLLKFATAGLETSAFALSSGVGASNALVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPFIGSAIAAIVYDTFFINHHTHEPLPVTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61641g00001 252 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Stsc61641g00001 252 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc61641g00001 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Stsc61641g00001 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Stsc61641g00001 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc61641g00001 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc61641g00001 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc61641g00001 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc61641g00001 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc61641g00001 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc61641g00001 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc61641g00001 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Stsc61641g00001 252 SUPERFAMILY Aquaporin-like 15 246 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61641g00001 Stsc-Chr61641 564 1647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61641g00001 1 252 Major Intrinsic Protein MIP AT4G01470 80.556 8.60e-145 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61641g00001 K09873 - gmx:547794 437.958