Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61605g00001 ATGGAGCCACTGCTGAGAGGCGAAGGGAGTGGTGGCCGGAGGGAGCTCGCGCGGGGGATATTCCGCCGCTCCGACGCCATCACTTATGGCTCCAACTATGAGAAAGCTGCTGCACTCGTCGATCTGGCTGAAGATGGTGTTGGTCTACCGGAGCAAATTCTTGATTCTTCAAGCTTTCAGAGTTCTTCAAGATATTATTTTATTTTCATTAAATTCAATATCTTGTGGTCTCTTGCTTATTTTGCTTTGATAGTCCTAAATTTTTTGGAGAAACCTCTGTGGTGTGAAAATTATACCACACCATCTTGCAGCGATAGAGAGTATTTCTTTCTGGGACAGTTGCCATATCTAACTGATGCAGAATGTCTTATTTATGAGGGATTAGCTATTGTGGTGTTAATCATACATACTTTCTTCCCAATATCATATGAAGGGCCTCGTATATATTGGAGAAATCCAATTAATCTGTTGAAGGCTCTGGGGCTTCTGTTTCTTCTTTTTGCAAGTTGGGTGGCTTATGTGATGTTTGAAGATACAATACAAGGAAAAACAGTATTCACTTCTTATGGTGCTACATTGTATCAGATATTTGTTTTATTTACCACATCAAATAATCCAGATGTCTGGGTGCCTGCATACAAGGCTTCACGTTGGTATTGCCTGTATTTCGTTATCTATGTGCTTTTCGGGGTTTACTTCGTTACAAACTTGGTCCTTGCCGTTGTTTATGATAGTTTCAAGAGTGAGCTTGTGAAACAAGTTTTCAAGATGGATCGTATGAGAACAGCAATGTTGGAGAAAGCTTTTAATCTCTTAGATACGCATAGTACTGGATATCTTAACAAAGAACAATGCATTAGGCTATTTGAGGAGTTGAACAAGTACAGGACTTTACCAAAGATCACCAAGGAAGAATTTGAGTTAATATTTGAGGAGCTCGATGATAGTCATGATGTAAAGCTCAACAAGGATGAATTTGCTGATATTTGCCATGCCATTGCCTTAAAATTCCACAAGGAAGATACTCCCTCTTACTTTGAGTATTTTCCATTCTACAATTCACCCGCCTCAAACAAATTGAAAGCATTTGTGAAGAGATCCATGTTCGGATACCTAGTTTCTTTTGTTCTCGTGCTCAATCTAGTTGCTGTTATTATTGAGACAACGCTTGATATACAAAATAATTCCGGTCAAAAGGTGTGGCAAGTGGTTGAGTTCATTTTTGGGTGGATATATGTAATAGAAATGGCTCTTAAGGTTTATTCATATGGATTTGAGAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTGTTATCACTTGGATAATTGTCATTGGAGAAACTATAACTTTTGCTTCGCCTGATGATCAGACTTTCTTCTCAAATGGAGAATGGATTCGTTACCTTCTTCTGGCAAGAATGTTAAGGTTGATAAGGCTCCTAATGCATGTCAAGCAATTCCGAGGCTTTGTTGCAACTTTCTTAACACTGTTGCCAAGTTTGATGCCATACTTTGGGATCATATTTTGTGTCTTATGTATTTATTGCTCGGTTGGTGTACAGATTTTTGGCGGACTTGTTAATGCTGGAAACCCTAAATTGATAACATCAGATCTTGCTGATAATGACTATTTGCTATTCAATTTCAATGATTATCCTAATGGAATGGTGACACTTTTCAATTTGCTAGTCATGGGGAACTGGCAAGTATGGATGCAGAGCTACAAGGAGTTAACTGGTACTTCTTGGGCCTACTTATACTTCATAAGCTTCTATTTAATCACGGTTTTGCTACTTTTGAACTTGGTTGTTGCTTTTGTCTTGGAGGCATTCTTCGCTGAAATAGAGCTTGAGTCATCAGACACCTCGGATGAACAGGACAAGGGCTATATGGCAGCACAAAGAGAAGAAATTCTAATTACATCGAGCATGTCAACTGACATGTTGACGGATATTTTGGGAGCCATCAAAGATCTGGCTGACACAGTTAGATGTCAATCCGAATCAAATAGAGAGTTCCTCGACCAGATTAGGAGTGAACACCAAAATGGGGAGGGTAGTGACACCAATGCTAAAAAACACCTGTCAACCCAAACTACCATAGACTGTCAGAGTTTAAGAAAAACACACCATCCTCTTTTCATGGCAAATATGATCCAGTCGTAG 2169 0.3933 MEPLLRGEGSGGRRELARGIFRRSDAITYGSNYEKAAALVDLAEDGVGLPEQILDSSSFQSSSRYYFIFIKFNILWSLAYFALIVLNFLEKPLWCENYTTPSCSDREYFFLGQLPYLTDAECLIYEGLAIVVLIIHTFFPISYEGPRIYWRNPINLLKALGLLFLLFASWVAYVMFEDTIQGKTVFTSYGATLYQIFVLFTTSNNPDVWVPAYKASRWYCLYFVIYVLFGVYFVTNLVLAVVYDSFKSELVKQVFKMDRMRTAMLEKAFNLLDTHSTGYLNKEQCIRLFEELNKYRTLPKITKEEFELIFEELDDSHDVKLNKDEFADICHAIALKFHKEDTPSYFEYFPFYNSPASNKLKAFVKRSMFGYLVSFVLVLNLVAVIIETTLDIQNNSGQKVWQVVEFIFGWIYVIEMALKVYSYGFENYWRDGQNRFDFVITWIIVIGETITFASPDDQTFFSNGEWIRYLLLARMLRLIRLLMHVKQFRGFVATFLTLLPSLMPYFGIIFCVLCIYCSVGVQIFGGLVNAGNPKLITSDLADNDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTSWAYLYFISFYLITVLLLLNLVVAFVLEAFFAEIELESSDTSDEQDKGYMAAQREEILITSSMSTDMLTDILGAIKDLADTVRCQSESNREFLDQIRSEHQNGEGSDTNAKKHLSTQTTIDCQSLRKTHHPLFMANMIQS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61605g00001 722 FunFam Two pore calcium channel protein 1 492 647 - -
Stsc61605g00001 722 SMART efh_1 264 292 IPR002048 GO:0005509
Stsc61605g00001 722 SMART efh_1 305 333 IPR002048 GO:0005509
Stsc61605g00001 722 Pfam EF-hand domain pair 265 329 IPR002048 GO:0005509
Stsc61605g00001 722 Pfam Ion transport protein 367 612 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc61605g00001 722 Pfam Ion transport protein 161 248 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc61605g00001 722 Gene3D - 358 491 IPR027359 -
Stsc61605g00001 722 Gene3D - 492 647 - -
Stsc61605g00001 722 ProSiteProfiles EF-hand calcium-binding domain profile. 301 336 IPR002048 GO:0005509
Stsc61605g00001 722 SUPERFAMILY Voltage-gated potassium channels 368 612 - -
Stsc61605g00001 722 SUPERFAMILY EF-hand 246 352 IPR011992 -
Stsc61605g00001 722 ProSiteProfiles EF-hand calcium-binding domain profile. 260 295 IPR002048 GO:0005509
Stsc61605g00001 722 FunFam Two pore calcium channel protein 1 359 491 - -
Stsc61605g00001 722 Gene3D - 151 246 - -
Stsc61605g00001 722 FunFam Two pore calcium channel protein 1 152 250 - -
Stsc61605g00001 722 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 159 641 IPR044581 GO:0005245
Stsc61605g00001 722 Gene3D - 247 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61605g00001 Stsc-Chr61605 3435 18777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61605g00001 1 637 Ion Channels AT4G03560 60.114 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61605g00001 K16900 - zju:107417780 874.004