Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61602g00003 ATGACCGTGGAGGACCAAATTGACCGGTTCCCGGTGGGTATGCGTGTTCTCGCTGTGGATGATGACCCAACTTGCCTCAAAGTCTTGGAGAATCTCCTTCGCAAATGCCAATACCATGTTACTACCACTAATCAAGCAATTGAGGCGCTGAGAATGTTGAGGGAAAACAGGAACAAGTTTGACCTCGTCATTAGCGATGTGAATATGCCTGACATGGATGGATTTAAGCTCCTTGAATTGGTGGGGCTTGAAATGGACTTACCTGTCATCATGTTGTCTGGACACAGTGACACAAAGCTGGTGATGAAGGGTGTTACACATGGTGCAGTTGACTATTTGCTGAAACCTGTTCGGATTGAAGAGCTAAAGAACATTTGGCAACATGTTGTCCGAAAGAAGAACTTTGATCCCAGGGATCAGAATAAGGCTTCCAATGACAAAAGGTGTCCCAATACTGCTGAGGAAGGTAATCAAAGTATCATGTCCGATGACAGCGGTGACCAGAATAAAAATCTTGGCAAAAAACGAAAGGACCAAACGGAAGAAGAGGAAGATGATGGTGAAGGCAATGGAGAGGATAATGATGACCCTTCATCACAAAAGAAGCCTCGTGTTGTTTGGTCTGTCGAGCTTCATAGAAAATTTGTTGCAGCAGTTAATCAACTTGGCCTTGATAAGGCTGTCCCTAAGAAAATACTTGACCTGATGAATGTTGAAGGACTTACTAGGGAAAATGTGGCAAGCCATCTGCAGAAATATAGGCTATATCTGAAAAAGGCAACCCAGCAAGCTAGCATGGTTGCTGCATTGGGTAGTACCGATTCATACCTGAGAATGGGTTCAATAGATGGATATGCAGAGTTTTGTACCCCTTCTGGTTCAGGAAGGATTTCAAGCACTGCTTTGCAATCATATGCCTCGAGTGGAATCTTCGGCAGGCTGAATTCCCCAGCTAGCTTGAGCATGAGAAGCATTAGTTCTTCCACTCTAATCCAGCCTCCTGTTCAGCCTCCAAACCTGAACAGCACCTTGAGCCCTCTGGGTAACATTCAGGCATCGATATTTCCAGCAAATCAAACCTCAGGTTTATTACAAGGAATTCCAACATCGATTGAGCTTAATCAGTCTAAGCAAAACTGTACAACAGGTATAACACAAGTAAATCAAGTTAGTTGTAGTGGATTTACTGCTGCCTCTGGCTTCCGTGACGGTAGGCTTACTGTCGGTACAGCAAGCAATTCTCTACCTTCAGCTGCCTCAAGTAATTCTTTAATGTTAAGAGGAAACTCACCACAAACACACAATTCGGGAGCATTTAGAAATCAGCCTCCTGTTAGACCAGCTTCTTTTGGCACAGATTCCTTTGATGTTGGCATTTGTGAGCCGTCTAATATGTTGGATTATAATCGGTGTAATGAAAACTGGCAGAATGCAGCACAGTTGTCTAAATTTCCTGCCCATCCCTTGCCCTTGCCATTGTGTGAGCCGTTCAATAACGACCCACTTCCTTCCACTGCCATAAGTGTTACCAACACAAATACTCATATTGGTCACAGTCCTGTTGATTATTCATCCAGAGTCGCGATTTCTGTTCCTTTGGAGGATACAGGAAATGAGCTGCAGTGCCAAGAAGGCTTAATTGGGAATATTCTACAGCCTTCGAGTTATACAACACCATCTCAAAGGTGGGAAGAACATAAACTTGAATACAGCCAAAACATGAGCCGTCCCTTCAACTCTGTAAACTCTGAAGTTTCTTCGAGTCGAGTAAAAAGTTCTCTGGGGCATAATGTAAACCAAAAGAATGCAACTTGTAGCAGCAGTTTTGATGCATCATTTGTTGGCCAACTGAGTGGAGCTCCTCCATCAATCACCCGGTGCACTAATGATGACACAAGACTGAAGTCAAATGATGCCTACATCTTGGAACAAATGAAGTCCCAAGATGGATTTATTCAGAATAATTTTGGCACCTTGGATGACATAATGGTCCCAGTAGTCAAAAGGGAGCAAAATGAATTGACATTTTTAGATGGCGAAATGGGATTCGAGGCTTACCCTGTTGGATCATGTATCTGA 2079 0.4348 MTVEDQIDRFPVGMRVLAVDDDPTCLKVLENLLRKCQYHVTTTNQAIEALRMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSGHSDTKLVMKGVTHGAVDYLLKPVRIEELKNIWQHVVRKKNFDPRDQNKASNDKRCPNTAEEGNQSIMSDDSGDQNKNLGKKRKDQTEEEEDDGEGNGEDNDDPSSQKKPRVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKATQQASMVAALGSTDSYLRMGSIDGYAEFCTPSGSGRISSTALQSYASSGIFGRLNSPASLSMRSISSSTLIQPPVQPPNLNSTLSPLGNIQASIFPANQTSGLLQGIPTSIELNQSKQNCTTGITQVNQVSCSGFTAASGFRDGRLTVGTASNSLPSAASSNSLMLRGNSPQTHNSGAFRNQPPVRPASFGTDSFDVGICEPSNMLDYNRCNENWQNAAQLSKFPAHPLPLPLCEPFNNDPLPSTAISVTNTNTHIGHSPVDYSSRVAISVPLEDTGNELQCQEGLIGNILQPSSYTTPSQRWEEHKLEYSQNMSRPFNSVNSEVSSSRVKSSLGHNVNQKNATCSSSFDASFVGQLSGAPPSITRCTNDDTRLKSNDAYILEQMKSQDGFIQNNFGTLDDIMVPVVKREQNELTFLDGEMGFEAYPVGSCI 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61602g00003 692 CDD REC_typeB_ARR-like 16 130 - -
Stsc61602g00003 692 Gene3D - 13 149 - -
Stsc61602g00003 692 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Stsc61602g00003 692 SMART REC_2 14 126 IPR001789 GO:0000160
Stsc61602g00003 692 MobiDBLite consensus disorder prediction 150 167 - -
Stsc61602g00003 692 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Stsc61602g00003 692 PIRSF RR_ARR_type-B 1 692 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc61602g00003 692 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 313 IPR045279 GO:0009736
Stsc61602g00003 692 Gene3D - 198 260 - -
Stsc61602g00003 692 MobiDBLite consensus disorder prediction 168 182 - -
Stsc61602g00003 692 SUPERFAMILY CheY-like 13 136 IPR011006 -
Stsc61602g00003 692 Pfam Response regulator receiver domain 16 124 IPR001789 GO:0000160
Stsc61602g00003 692 FunFam Two-component response regulator 198 261 - -
Stsc61602g00003 692 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160
Stsc61602g00003 692 MobiDBLite consensus disorder prediction 136 202 - -
Stsc61602g00003 692 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Stsc61602g00003 692 SUPERFAMILY Homeodomain-like 200 259 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61602g00003 Stsc-Chr61602 13778 18528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61602g00003 1 508 Response Regulator Gene Family AT2G25180 47.940 5.15e-131 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc61602g00003 Response_reg 2.3e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61602g00003 K14491 - gmx:100776075 1000.73