LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc61589g00001	ATGACAAATTTGCCCCAGTCATTATCAATGAACGCAGCCTTTGGCAGCGGCGGTGCTGTTCCTCCGCCCTCTCCCGGTGGCTCCTCCCAGAACTCACCCGGAGGCACCAAGGATCGCAAGATGGCCTCCGCCGAGCAGCTCGTCCTCGAGCTCAGCAACCCCGACCTCCGTGAAAACGCTCTACTCGAACTCTCCAAGAAGAGAGAATTATTTCAAGATCTAGCACCATTATTATGGAATTCTTTTGGTACTATTGCTGCACTTTTGCAGGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCAGCACAATCAAATCGGGTGTGCAATGCACTTGCTCTTCTTCAGTGTGTAGCATCACACCCTGATACAAGGATGTTGTTCCTCAATGCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACGAGCAAATCAAGACCTTTTGAGTACTTGAGACTCACCAGTCTTGGCGTCATTGGTGCTTTGGTGAAGGTTGATGATACAGAAGTCATAAGTTTCCTTCTTTCAACTGAGATAATTCCATTGTGCCTGCGCACCATGGAAATGGGCAGTGAACTATCAAAAACAGTTGCAACTTTTATTGTTCAGAAAATCCTATTGGATGATGTGGGCTTGGATTATATTTGCACGACAGCAGAGCGTTTCTTCGCAGTAGGTCGTGTTTTAGGAAACATGGTGGCAGCTCTTGCTGAGCAGCCCTCGTCTCGTTTGTTGAAGCATATTATCCGATGCTATCTTCGCCTATCAGATAATCCAAGGGCTTGCGATGCATTAAGAAGTTGTCTTCCAGACATGTTAAGAGATGCTACTTTCAGCAACTGCCTTCGCGAGGACCCCACAACCAAGAGGTGGCTACAACAATTGCTTCACAACGTCGGTGTGAGTCGGGTGCCTGCCCTGCAAGCCGCAGGAGGCTTCGACCATATGATGCTGACATGA	978	0.4714	MTNLPQSLSMNAAFGSGGAVPPPSPGGSSQNSPGGTKDRKMASAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSNCLREDPTTKRWLQQLLHNVGVSRVPALQAAGGFDHMMLT	325

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc61589g00001	325	MobiDBLite	consensus disorder prediction	23	37	-	-
	Stsc61589g00001	325	FunFam	Cell differentiation protein RCD1	37	308	-	-
	Stsc61589g00001	325	Pfam	Cell differentiation family, Rcd1-like	47	305	-	-
	Stsc61589g00001	325	PANTHER	UNCHARACTERIZED	38	308	IPR007216	GO:0006402\|GO:0030014
	Stsc61589g00001	325	MobiDBLite	consensus disorder prediction	1	43	-	-
	Stsc61589g00001	325	SUPERFAMILY	ARM repeat	49	273	IPR016024	-
	Stsc61589g00001	325	Gene3D	-	35	306	IPR011989	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc61589g00001	Stsc-Chr61589	4074	10609	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Rcd1-like	Stsc61589g00001		Rcd1	2e-130	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc61589g00001	K12606		-	gmx:100784529	580.096