Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61581g00001 ATGTTCTCGAAGCTTCATCAACAACCACAACCGCAACAGCAACAACAATACTCTTTCCAAGTCTCCCGAGAATGCCAAACCTCAGAAGACGATGATAGCGGTGGGCCCATTCTCGGCTCATCCCAAAAGCCCAACTCAATAGATGGCGCCAGTATCGAAGTCATCAGGCGTCCCAGGGGCCGTCCACCTGGCTCCAAAAACAAGCCCAAGCCTCCTCTCGTAATAACACGGGAGCCCGAGCCCGCCATGAGCCCATACATTCTCGAAATCCCCAGCGGAAACGATGTCGTTGAATCCATCGCTACGTTCACACGACGCAAGAATAAGGGCCTCTGCATCCTCTCTGGTTCTGGAACCGTTTCCAACGTCACCCTCCGTCAACCGTCCAACGCCGCCTCCCACGATGCCACCGTTACGTTCCACGGCCGCTTCGAACTACTCTCGATCTCCGCTTCTTTCCTCCCTCACGCGCCGCCGCCTACGGTTCCGAGTTCGTTCTCCATCTCGCTCGCCGGACCTCAGGGCCAGATCGTCGGAGGACTCGTAGCTGGCAAGCTGATCGCCGTCGGAACGGTTTACGTGGTTGCGGCGTCGTTCAGCAAAGCGGCGTACCACAGGCTGCAGTCATCGGAGGAAGAGGTCGCCGGTGGAGCTGGAGTCGGAGAGGTGCAGTCACCGCCGGTTTCTGCTGCGACGGAGAGCGGAGGAGGGGGACACGTGGCGGTTGGTGATCAGTCTTGTGGTGCTGGAGTGATGTACAGCGGTCACCTCCCTTCCGATGTGATTTGGGCTCCAACGGCAAGACCACCATTTTGA 816 0.5821 MFSKLHQQPQPQQQQQYSFQVSRECQTSEDDDSGGPILGSSQKPNSIDGASIEVIRRPRGRPPGSKNKPKPPLVITREPEPAMSPYILEIPSGNDVVESIATFTRRKNKGLCILSGSGTVSNVTLRQPSNAASHDATVTFHGRFELLSISASFLPHAPPPTVPSSFSISLAGPQGQIVGGLVAGKLIAVGTVYVVAASFSKAAYHRLQSSEEEVAGGAGVGEVQSPPVSAATESGGGGHVAVGDQSCGAGVMYSGHLPSDVIWAPTARPPF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61581g00001 271 MobiDBLite consensus disorder prediction 33 48 - -
Stsc61581g00001 271 CDD DUF296 85 199 IPR005175 -
Stsc61581g00001 271 FunFam AT-hook motif nuclear-localized protein 84 218 - -
Stsc61581g00001 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 213 - -
Stsc61581g00001 271 MobiDBLite consensus disorder prediction 1 79 - -
Stsc61581g00001 271 Gene3D - 85 218 - -
Stsc61581g00001 271 MobiDBLite consensus disorder prediction 215 239 - -
Stsc61581g00001 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 200 IPR005175 -
Stsc61581g00001 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 228 IPR014476 GO:0003680
Stsc61581g00001 271 ProSiteProfiles PPC domain profile profile. 80 221 IPR005175 -
Stsc61581g00001 271 PIRSF ESCAROLA 1 263 IPR014476 GO:0003680
Stsc61581g00001 271 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61581g00001 Stsc-Chr61581 5958 6773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61581g00001 46 270 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 61.472 3.95e-89 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61581g00001 - - gmx:100811053 322.013