Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61579g00002 ATGGAATGTGTAACGGGCATTGCAAGTGGAGTTTTGTCAAAAATTGCTGAGCTGCTGATTGAACCAATTGGTGCAAACTGTGCCTATTTGATTTCCTATGATGACAACCTCACCAGCCTGAATGATGCACTTGAGGCATTAGAAGGCAAGAAGCAACAAGTTCTATCCAAGATGCTTGAAGACCAGAACAGTGGTCGTGAAATTCTGCCATATGTGAAAGATTGGCTCCAAAAGGTTGAAGAAATTCAAGCAGATTTAAGAAGTTTCAAAGAGGTGGAGGCCAGAAGGAACAAGAAGTGCCTTGGCGGATGGTGTCCCAATCTGAAAACTCGCTATTCATTTAGCAAGAATGCCAAGAAGAACGCTGACAAGCTTGTGCAACTCAAGGAGCAAAAACTTGAGAAAATATCCGCCCCTGCACCTCCATTGAAATATGAGGAATTCTTTTCAACAAAGGGCATCAAAAGCTTTGAGTCTCGGAACGAGATTGTAAGAGGTGTCATTGAGAAGCTCAAGGAAGAAGGGTGTAACAAGATCAGCATCTGTGGCATGGGGGGAGTGGGTAAAACCACTCTCGTGACTGAAGTGATCAAAATTGTAGAAGCAGAGAAGCTTTTCGACAATATCGCAATGGTGACTGTGTCTCAAACTCCCAATATCAGCAAGATTCAAACTGAAATTGCTGCTAGGTTGGATCTAAAACTAACCGATAAGAATTCAGAAACAATAAATGCCCAAGAAATCCTTGCTAAGATAAACAGAAGCCCTGGGGTCTTGATAGTGCTTGATGATGTGTGGATGGAGCTAGATCTTGTGTCCATTGGGATTCCATCCAATGGGAATCCTAACACTTGCAAAGTGATATTCACATCAAGAAATGAAGGGGAGTGCTCCAAGATGGGGAGTCAAAAAACTTTCACTGTTATCTCCTTGTCCAAGGAAGACTCGTGGGCCTTATTTGAGGAGATAGTAGGTGGCGATGTCATGAACAAAGCTGAAATTCGTCTCATTGCAGAGGATATTGCCAAGCAGTGTGGGGGATTACCCATTGCTCTTGTCACTGTTGGGAAAGCACTTCGCGGGAAAGGGGAGAAGTATGTTTGGGAGAATGCTCTTAAAGATTTAAGAACATCCTCGGCATCTTTCTCAGATGTGGAGAAGTGTATTGAGCTGAGTTACACTCTGTTGGACAAAAGGAACGCAAAGGATCTCCTTTTTCTGTGTTGCTCGTTTCCTGAAGACACTGATATTCCCATTGAAGTTCTTTTAAGGGAAGGATGGGGTCTGGGAAGGTTGTTTCAAGGTGAAGATTATTCATTGTATGAAGCAAGGAATAAGACACATTCCTTGGTGGATGATCTCAAGGCATGCTTCCTGCTTTTGAATAGCGACAAGAAAGAATGTGTGAAGATGCATGATGTTGTGCGCGATGTCATCACATCCATCGCATCCAAGAAGGAAGATTACAAGATACAGTGTGAAGATGTAGAGAAATGGAGGCCGGACAAAAGCACAAGCAGTTCTTGTAGTGCAATTTCAATTAGGACTTCTGAAGTGCAGTGTCCCAATGTGGTGGACTATCCAAAGCTTGAGATCCTTCGAGCCGAATCACCCAGTCGGTGGAGCAAAATATCTATCCCGGCAAAGTTGTTCCATGGCATGAGTAGTCTCAAGGTTTTGTATTTGTTTTCATCATTCATTCCAGATGCTTCATCTCTCTTTCCTACCTTGAAATGTCTTGGAACGTTGCGCTTAGAAGACTGTGAGGTTGGAGATGTATCCATAATTGGTAAGGAGCTTCTGGCACTTGAAATTCTTAGCTTTGCACGCTCAGGCATTGTAGAGTTACCGACTGAAATTGGGCAGTTATGTTCTCTAAGACTGTTGGATTTGACTGAATGTGATAAGTTGTGCAAAATTTCTTCTAATGTGTTGGCAAGATTAGATCGATTAGAAGAATTTTATTTCATGACGAGAAGTTTTCGATGGATGCAAAACCATGATTTTGTAGATGAGTTACAAACTGTATTCCATCGGCTAAAGTTAGTTGAGATTGCTATAAAGAAGGTTGAATCAGTTTTCGACTACTTGAGCTTTAAAAACGTGTCAAGATTTCTGGTCCAAGTGGGAGTTGCTGCTCGTGTTTATGATTCCTCTGAGTCTGCTGGATATATGAAGCCCAATATGTTACGGTTAAGAGATGTTAATTACAGCTCTATTGAGTGTAGCAAGCTAATTACTCAATTGATTCAGAAATGTGAAATTCTCAGAATTGATAATGTAAAGAACTTGAAAAATATAATATTTGGTTCAAAAGGTGGTGTTGAACTATCATATTTAAAAGATCTAAAGATACAAAGCTGTTCCGATCTGGAATGTCTTACAGAAGAAGAAGAAGGTGAAGAGCATAAATCAATGAGTAATATGCCAAGTTTAGTAAAGTTGGAGTTGAGGTATCTACCGAAGCTGACATGCTTTAGGAGAGCGAGTGATATGAACAAGTCTCAATTCCAACATTTGGAGACAATTGTGATAAAAAGCTGCAAATCCTTAGCCATGGCATTTGACTCACAAGCATTCCAGAATCTGAGAGATCTGTCAATCAGTTATTGTGACTCTATAAAGCATATATTTAGCCCTGCCAATGGTGAAGTAATGCCACAACTAGAGAAATTACATATTAAGGGGTGCAAAGAGATGTCAAATTTAGTGGGTTGCAGTAAAGATAAGGAAGCAGCAGAGGATTATAATTGTGAAGGAAAGGTGAAGATTATAGTTTTCAAAAAACTATATCGTTTATCACTTTCCTTTCTCCCAAAGCTTGAGAGTATTTGCACAAATTCCTATGAGCAAGTACAGTGTCCATCACTAATGCGCTTGGATATTTTTGATTGTCCTATGCTAAAAGCACCATCATTTCAGAATCACATGCCACAAGAAAGCAATTCCTTAGATATGGTATTTGATCCGCAAGTATTTCAAAGCTTGAGATCTTTGAGGATCTCACGTTGTCATTCTCTAGCACATATATTTACTCCCGTCATGAGCAATGTAGCACCGGAGCTTGAAGAATTAGAGATTAGCTTATGCGAGAAGATGACAAGTTTAGTGGGTGAGAGCAAAAATCACAGAGAAGTGAATACTATAGTTTTCAAAAAGCTATATTCTTTATCACTTGATGATCTCCCTTTGTGTGAGAGCATCTGTTCAAATTCGTGCGATACAGAATGGCCATCCTTAAGACAATTAAACATTCAACGTTGTCTTGTGTTGAAGTCATTACCATTGTTCCAAATTGAAAAGCATTTAATGCAAGACAATCATGAAGGGGTCACATCTTATTCAAATACCAAAAAAAATAAGTCAAGTCATTCTAATTGCTTTCTTGAATGCGCACCAGTTCTATCCAAATTTATTCACCAAGCCAACACAAATAAGAAGCCTGATAAGACAGCAATAACAGCTAAGGATCAACCATCTTCTATTACCATGATAGAGAGTATGCCTATTCTTGAGAAGATTCATATCAAAGATTGTGATGATATGCAAAATATATTGCATTTAGTTGGGAAAAACTATGACTCAACCATTCATTCACAATTGAAAACTATCCAAATTGAAAGATGTGAAAAGTTAGCATCTATTGTGTCTAAGATTAATGGGGAAGAAATAAAAAAGATTATGGAATACTTTTCTGAACTACAATCTCTTGAGTTGAATTATCTACCAAATCTTTCAAGCTTTGTTTGCTCTGAAACTTGTACATCCATGGATAAATTACCTGAGGTTATGGGTGCATGCGAGGGAAACCAACTACAACTTGTTCCCTTTATAGATGTAGATGTCTTCTTGTTTTCTAACTTAAGATCTCTAGTCATAAGAGGATGTAACAAAATTCACATCTTGTTCTCTTCATCATCCTTAGAAAGCCTTCGGTGTCTTGAACACTTGAAGTTAGAATATTGTGACAACATCGTTGAAATTGTATCTGCAAACAAGATTGTGTTTCCTAAACTAGAAAAGCTATTTCTTGAAGGACTTCCAAAGCTCAAAAGTTTCAGCCAAGGACCCAATGACATGGATTTTCCATCATTGCAAACTGTGGAAATTATATATTGCCCCAGCATGGGAATGTTTTCACAAGGGTCTTCAAATACACCAAAGCTCAAGCATTTCAAAATGAAGATAGGACTATATACCAGCGAATATGTATATAATGGTGATTTGAATGCTACTATAAAAGGATTTAAAGCCTTCGTGGAATTACAACATGAAGAGATGTTGAGTTGGAATGATCATCACAATGAAGGCTTAATATACTTCATTAACTCTGAAATGGATCTAGAAAGGTTTCATAAACTAAGGATGGTTGTTCCATTCAATGACAGACGCAAGCTTCAAAATGTGAGGAGACTCTGCATAGAAAATTGTGATTCATTAGTTGAGGTGTTCCAATCCAGAGAAGAAATAATGGATGCAAAAGAAAGGGATGATGAAATCATACATTATGAGCTAAGAAGCATGACCTTGACAAGTTTGCCAGAACTAAGGCACATTTGGGGACCCAAACTTATGCCACTTGTAACCTTTGACAAGCTAACATCGATCACTGTTAAATATTGCCGTAGTTTGAAGAGCTTAATGTCCCACTCCATGGCTAAAAGGCTTGTTCATCTTGAAAACCTAAGGGTTAAATATTGCTATATCATGGAAGCAATAGTTACAGAGGAATATGACGATGAGAACAGAGAAAAAGAAGTGTTAGAAAGGGAGAAAAAGAAAATCAAGGGAGTATATCTCTTACGGTTGCCAAAGCTTTTGAGTATAACTTCGCCAAATGTGCTTCAACGTGTGATGAATCTTAGAATAACAGATTGTAATTCACTACAAAAGGTCTTTGAATCAGAAGAAGTATTTGATGTAAACCAACGAAATGTGACCACACAGTATGAGATAGAAAGCATGGAATTATGGAACTTACCAAAGCTTACTCACATTTGGGGGGCCAGCATAAACAGAAAGCTTGTAAGCTTTGATAAGCTAACATCAATCCAGATTGACAAGTGCAACAGTTTAAAGAGTTTGCTCTCTTATTCAATGGCTAAGAACCTTGTGCAACTTCAAAGACTAGTCGTTCTTAACTGTGGCATGATGGAGGTGATTGTTACAATAGAAGATGAGAGCATGGATAACCGAGGCAACAAAGTTATATCTTTATTTCCCAATTTACAGAAGTTGGAGCTTTATAATCTTCCAAAGCTTGAATGCATATGTTCTCAACTAGATTGTGGATATGGCATCCCATTGTGCAGTGAAGAGGAAGAAGAAGATAATAAGCAAATTCATATATCACTTCCTCAATTAAATGAAGTGACTTTACGTTATGTTCCAAGCCTCAAATGTTTCTGTCCAGGAGCATATGACTATGATATCATGCTTTCATCATCATCTTGCTTTGAAGATTGCACACTATTCTCATCCTTTCCCAATGGAAAGGTAACTGTAAGCACACCCAACCTTCAAATGTGTCGTCTAGGATATTATAATGCTGAGTATGTGCCTATACTAGAAGACCTTAACACGACAATACATATCTGGCATAACAAACAGAAATACAAGGTTGAGTTGCAAAGATTAGATACATTGGCATGTATTGAGCAAGATGGTTATCAACACTTGTTGGCCTACGTCTTGAGGTCAAGAAAACTCATCCTTGACAGTTGCCACAAGTTAATTACATGCATCCCATCTGACACGAAGAATCGTTTATTGTTCCAACATTTGGAAGAACTCAATGTGGAACATTGTGAATGCTTACAAGTAATCTTTGAATCAAATGATTTTGGTGGAACCGAGTTAACCTCCATGAGGTTGAGTTCCTTGCCAAATCCTGGCCCTCTTTCAAGCTTCACAAATTTAAAAATGCTAAGAATCAGTGAGTGCCATGATATGAAATTTGTGTTCCCTAATGTTTCTGTAGCCATGAACCTTTCCGGATTAAGTGAGCTTACCGTGTGGGAATGCAACCAGATGGAAGAGATCATCCAAAAAGAGAATGTTGACAATAGTTTTATATCAAAAGTGGATAAGGTTATATTCCCAAAATTATATGAAATTAAGCTTGAAAAGCTTCCCGAGCTTAATTGTTTCTGTAAAAGCTCTTTCTGCTATGAGCTATCATCATGCAAAAGAATATATATAAAGGAATGTCCTAAAATGGAGACCTTCTGCTCTGGGACCCTATGTGCACCTAAGCTCGAGGATTTCCGTGTGGAGGGCATGAAATGCGATGTAGAAGAAAACATCAATGAGGAGATAAAAGGGAGACACCGTGGAATCAATTAG 6345 0.3838 MECVTGIASGVLSKIAELLIEPIGANCAYLISYDDNLTSLNDALEALEGKKQQVLSKMLEDQNSGREILPYVKDWLQKVEEIQADLRSFKEVEARRNKKCLGGWCPNLKTRYSFSKNAKKNADKLVQLKEQKLEKISAPAPPLKYEEFFSTKGIKSFESRNEIVRGVIEKLKEEGCNKISICGMGGVGKTTLVTEVIKIVEAEKLFDNIAMVTVSQTPNISKIQTEIAARLDLKLTDKNSETINAQEILAKINRSPGVLIVLDDVWMELDLVSIGIPSNGNPNTCKVIFTSRNEGECSKMGSQKTFTVISLSKEDSWALFEEIVGGDVMNKAEIRLIAEDIAKQCGGLPIALVTVGKALRGKGEKYVWENALKDLRTSSASFSDVEKCIELSYTLLDKRNAKDLLFLCCSFPEDTDIPIEVLLREGWGLGRLFQGEDYSLYEARNKTHSLVDDLKACFLLLNSDKKECVKMHDVVRDVITSIASKKEDYKIQCEDVEKWRPDKSTSSSCSAISIRTSEVQCPNVVDYPKLEILRAESPSRWSKISIPAKLFHGMSSLKVLYLFSSFIPDASSLFPTLKCLGTLRLEDCEVGDVSIIGKELLALEILSFARSGIVELPTEIGQLCSLRLLDLTECDKLCKISSNVLARLDRLEEFYFMTRSFRWMQNHDFVDELQTVFHRLKLVEIAIKKVESVFDYLSFKNVSRFLVQVGVAARVYDSSESAGYMKPNMLRLRDVNYSSIECSKLITQLIQKCEILRIDNVKNLKNIIFGSKGGVELSYLKDLKIQSCSDLECLTEEEEGEEHKSMSNMPSLVKLELRYLPKLTCFRRASDMNKSQFQHLETIVIKSCKSLAMAFDSQAFQNLRDLSISYCDSIKHIFSPANGEVMPQLEKLHIKGCKEMSNLVGCSKDKEAAEDYNCEGKVKIIVFKKLYRLSLSFLPKLESICTNSYEQVQCPSLMRLDIFDCPMLKAPSFQNHMPQESNSLDMVFDPQVFQSLRSLRISRCHSLAHIFTPVMSNVAPELEELEISLCEKMTSLVGESKNHREVNTIVFKKLYSLSLDDLPLCESICSNSCDTEWPSLRQLNIQRCLVLKSLPLFQIEKHLMQDNHEGVTSYSNTKKNKSSHSNCFLECAPVLSKFIHQANTNKKPDKTAITAKDQPSSITMIESMPILEKIHIKDCDDMQNILHLVGKNYDSTIHSQLKTIQIERCEKLASIVSKINGEEIKKIMEYFSELQSLELNYLPNLSSFVCSETCTSMDKLPEVMGACEGNQLQLVPFIDVDVFLFSNLRSLVIRGCNKIHILFSSSSLESLRCLEHLKLEYCDNIVEIVSANKIVFPKLEKLFLEGLPKLKSFSQGPNDMDFPSLQTVEIIYCPSMGMFSQGSSNTPKLKHFKMKIGLYTSEYVYNGDLNATIKGFKAFVELQHEEMLSWNDHHNEGLIYFINSEMDLERFHKLRMVVPFNDRRKLQNVRRLCIENCDSLVEVFQSREEIMDAKERDDEIIHYELRSMTLTSLPELRHIWGPKLMPLVTFDKLTSITVKYCRSLKSLMSHSMAKRLVHLENLRVKYCYIMEAIVTEEYDDENREKEVLEREKKKIKGVYLLRLPKLLSITSPNVLQRVMNLRITDCNSLQKVFESEEVFDVNQRNVTTQYEIESMELWNLPKLTHIWGASINRKLVSFDKLTSIQIDKCNSLKSLLSYSMAKNLVQLQRLVVLNCGMMEVIVTIEDESMDNRGNKVISLFPNLQKLELYNLPKLECICSQLDCGYGIPLCSEEEEEDNKQIHISLPQLNEVTLRYVPSLKCFCPGAYDYDIMLSSSSCFEDCTLFSSFPNGKVTVSTPNLQMCRLGYYNAEYVPILEDLNTTIHIWHNKQKYKVELQRLDTLACIEQDGYQHLLAYVLRSRKLILDSCHKLITCIPSDTKNRLLFQHLEELNVEHCECLQVIFESNDFGGTELTSMRLSSLPNPGPLSSFTNLKMLRISECHDMKFVFPNVSVAMNLSGLSELTVWECNQMEEIIQKENVDNSFISKVDKVIFPKLYEIKLEKLPELNCFCKSSFCYELSSCKRIYIKECPKMETFCSGTLCAPKLEDFRVEGMKCDVEENINEEIKGRHRGIN 2114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61579g00002 2114 Gene3D - 310 397 IPR042197 -
Stsc61579g00002 2114 PRINTS Disease resistance protein signature 178 193 - -
Stsc61579g00002 2114 PRINTS Disease resistance protein signature 252 266 - -
Stsc61579g00002 2114 PRINTS Disease resistance protein signature 345 359 - -
Stsc61579g00002 2114 PRINTS Disease resistance protein signature 621 637 - -
Stsc61579g00002 2114 Gene3D - 150 309 IPR027417 -
Stsc61579g00002 2114 Coils Coil 72 92 - -
Stsc61579g00002 2114 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1619 1841 - -
Stsc61579g00002 2114 Coils Coil 1571 1598 - -
Stsc61579g00002 2114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 399 IPR027417 -
Stsc61579g00002 2114 Pfam NB-ARC domain 162 381 IPR002182 GO:0043531
Stsc61579g00002 2114 SUPERFAMILY L domain-like 470 1100 - -
Stsc61579g00002 2114 Coils Coil 115 135 - -
Stsc61579g00002 2114 SUPERFAMILY RNI-like 1285 1574 - -
Stsc61579g00002 2114 Coils Coil 30 57 - -
Stsc61579g00002 2114 Gene3D Ribonuclease Inhibitor 480 923 IPR032675 -
Stsc61579g00002 2114 SUPERFAMILY RNI-like 1511 2018 - -
Stsc61579g00002 2114 Gene3D Ribonuclease Inhibitor 1253 1401 IPR032675 -
Stsc61579g00002 2114 Gene3D Ribonuclease Inhibitor 924 1119 IPR032675 -
Stsc61579g00002 2114 Gene3D Ribonuclease Inhibitor 1901 2094 IPR032675 -
Stsc61579g00002 2114 Coils Coil 154 174 - -
Stsc61579g00002 2114 FunFam Probable disease resistance protein At1g61300 144 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61579g00002 Stsc-Chr61579 4280 12412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61579g00002 179 454 WRKY Transcription Factor Family AT5G45050 25.795 2.33e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61579g00002 - - lja:Lj1g3v4058580.1 934.48