Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61559g00004 ATGGGTGCGGTGGAGGTTTTTCAAGAGCAACCGCTGGTGGTAGACTCTGCTCCGGTTTTGTCGCTCAACTCGCTGCCGTTGGGGTTCCGATTCCGACCCACCGACGAGGAGCTCGTTGACTTTTACTTGCGCCAGAAGATCAACGGCAATGGTGATGAGGTTTGGGTCATTCGAGAAATTGATGTTTGCAAATGGGAGCCTTGGGATTTGCCTGATTTGTCAGTGGTTCGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGACAGGAAGTATCCAAATGGCCACCGGCTGAACCGAGCAACAACTCATGGATACTGGAAGGCAACTGGCAAGGATCGGAAGATTAAGTCTGGCTCTACCGTGATAGGAATGAAGAAGACTCTTGTATTCTACACTGGCCGTGCTCCCAAAGGGAAGAGGACCAACTGGGTGATGCATGAGTACAGGCCTACCCTGAAGGAGCTCGACGGTACCAATCCTGGGCAGAACCCATATGTCATTTGTCGATTATTTAAGAAACAAGATGAGAGTCTTTTTGAAGGCTCAAATGGTGAAGAAGCTACAGAAGATGACAAGCAACTAGCAGTTATCCCTGTGACTCCTGAAGAAGTAATATCCAATGTTATAACCCCGGTTACTTGCCACAGTGATCGATGTGATGCACAAAATCAAATTGCAGTAGGAGATCCATCTAAAAAGGGTGACTTGCAAGTGAACATGGACATATTTTATGACCCGGGTGAGCTATTTGATGATAAACTATTCTCCCCACTCCACAAGCATATTCCGGAAGAATTTTTTAATCAATCAAACAATGAAGCCAATGGACATTTTGGGCTGCAGCATCAGGGTGGTACAAATGAGATTAGTATATCCGACTTTTTTGACTCTGTTATTAACTGGGATGAGATCTCCGGTGACAATTCCAGTGGCCAAACACCAAACTCTGCTTGGTTTGATGTTCAGGGCTCATGGGGCAACTCAAATGTGGATATGGTCCATTCTAGGTCTCTACAAGTAGGGGGTGCAGATTATCCTGGGGATTCAACTGAGGCAAAGCTTCCTTTGTTGAATACTAGAGAATTCAATGCCAACACCTCTTATGGCAATGCATTCAACAACAACATGGTATTATTTCAAGACCATTCCCAGATGGCTTTTCCATACAATGTTAATATGGGCCAAGGGTACAATCCAACCGAAAAATACGAGCAACCGACAAACTATAATATGGCTAATAGTGGCAACACTGGAATTAAGTTAAGGTCTCGGCCATCAAGTTATGAAGGGCCAAACACAAACCCAGTGATGCGATCACAAGGTACTGCACCTAGGAGAATACGGTTGGCACGATTTGTTGCACCTCAAAACACCTCCAATGAGGCTGCAAAAGACCTGAGTTGTGAGTCAGAAGACCATAATTCGCAACTAACCACTGCCAGGGAGATGGAAACGTCCAAAGACATTGCTGCTGGTGAGTGTGTTACTGTTACTAATGTGGAGGAACAGGAGACATCACCAGTTGAAAATAAGGAATTCGAAGACTCCAACATAGTCCCACACCGCACATCATCAGCTTCCACCAGTCTTTCCACGTTGTCTTCTGATTCTGAAGTTTCAAATGGGGCAGAAAAAGACTCCAGCTGGACATCAGAAGACCATAGTCCGAAACCAACCACTGCAGGGGCTAGTAAAGCTTCTGAAGACCACGCTGCTAGTGAGAGCATCAATGATCCTACTAGTGATGTGGATGAACCCTGGATAAGAAGCAGTAATAGACTAGAGGTCTCGAATGAGAAATCCTTCTCGGCCTCGGAATCAAAAGACTCTCTATTGCATAGAAAGGTGCGTTACACGACAAGGTCTTCCTCCAATCTAGCCAAGTGGTCTTCGGTTATTGCAGTCTCAGCCACGGTGGTGGTGATACTAGCATTCCTTGTTAATAATACGTGGGGATATGGATATGACCTTAAAGTTTGA 1986 0.4552 MGAVEVFQEQPLVVDSAPVLSLNSLPLGFRFRPTDEELVDFYLRQKINGNGDEVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIKSGSTVIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVICRLFKKQDESLFEGSNGEEATEDDKQLAVIPVTPEEVISNVITPVTCHSDRCDAQNQIAVGDPSKKGDLQVNMDIFYDPGELFDDKLFSPLHKHIPEEFFNQSNNEANGHFGLQHQGGTNEISISDFFDSVINWDEISGDNSSGQTPNSAWFDVQGSWGNSNVDMVHSRSLQVGGADYPGDSTEAKLPLLNTREFNANTSYGNAFNNNMVLFQDHSQMAFPYNVNMGQGYNPTEKYEQPTNYNMANSGNTGIKLRSRPSSYEGPNTNPVMRSQGTAPRRIRLARFVAPQNTSNEAAKDLSCESEDHNSQLTTAREMETSKDIAAGECVTVTNVEEQETSPVENKEFEDSNIVPHRTSSASTSLSTLSSDSEVSNGAEKDSSWTSEDHSPKPTTAGASKASEDHAASESINDPTSDVDEPWIRSSNRLEVSNEKSFSASESKDSLLHRKVRYTTRSSSNLAKWSSVIAVSATVVVILAFLVNNTWGYGYDLKV 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61559g00004 661 MobiDBLite consensus disorder prediction 521 548 - -
Stsc61559g00004 661 MobiDBLite consensus disorder prediction 418 441 - -
Stsc61559g00004 661 Gene3D NAC domain 34 179 IPR036093 GO:0003677|GO:0006355
Stsc61559g00004 661 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 288 - -
Stsc61559g00004 661 ProSiteProfiles NAC domain profile. 25 175 IPR003441 GO:0003677|GO:0006355
Stsc61559g00004 661 MobiDBLite consensus disorder prediction 455 591 - -
Stsc61559g00004 661 FunFam Nac domain-containing protein 86 34 178 - -
Stsc61559g00004 661 MobiDBLite consensus disorder prediction 575 591 - -
Stsc61559g00004 661 SUPERFAMILY NAC domain 18 175 IPR036093 GO:0003677|GO:0006355
Stsc61559g00004 661 Pfam No apical meristem (NAM) protein 26 151 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61559g00004 Stsc-Chr61559 10232 13801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61559g00004 19 302 NAC Transcription Factor Family AT5G24590 51.282 3.17e-91 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc61559g00004 NAM 3.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61559g00004 - - aip:107609038 1080.09