Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61555g00004 ATGACGCGGCGGTGCTCGCATTGCAGCAACAATGGCCACAATTCCAGGACTTGCCCCAACAGAGGGGTTAAGCTTTTCGGGGTCCGATTGACCGACGGGTCGATCCGAAAGAGCGCTAGCATGGGAAATCTCACCCACTATGCCGCCTCGGGTTCTGGTTCCGGGTCCCACCACCACCATGCATCCAACAATCCAGGTTCTCCCGGCGGTGGTGACACCCCCGATCATGCTGCCGCCGAGGGTTATGCCTCCGAAGACTTTGTTCCTGGGTCGTCTTCAACCTCCCGTGAACGAAAAAGGGGTGTCCCATGGACTGAGGAGGAACACAGAATGTTTTTACTTGGATTGCAGAAGCTTGGGAAAGGTGATTGGCGTGGGATTGCGCGGAATTATGTCACAACAAGGACACCTACTCAAGTGGCCAGTCATGCTCAAAAGTATTTCATCAGGCAGAGCAATGTGTCTAGGCGCAAAAGACGTTCCAGTCTATTTGATATCGTCGCAGATGAATCAGGTGACGCAACAATGGTGCAGCAAGATCAGCCACAGGCTGAAACAGAAGGCAATAACCCCTTGCCTGCTCCTCCAGCCCTTGATGAAGAGTGTGAATCCATGGATTCTGCTAACTCAAATGACAGGGAATTGGCCTTACTGAAGCCAGATAACTCTCAATCACCATACCCGTTGCTGTATCCTACCTTTTATCCTCCTCTCTTCCAATTACCTATTCCATGCTGGTCAGGATATGATCCAGAGCCTGCTAAGAAGAAGGAATCTCATGAAGTGCTGAAGCCAACACCGGTGCATTCTAAAAGCCCAATTAATGTTGATGAACTGGTTGGCATGTCAAAACTGAGTTTAGGAGACTCCATTAGCGACTCTGCCCCATCATCCCTGTCCCTAAAACTCCTCGAAGGACCTTCTAGACAGTCAGCTTTTCATGCAACTCCAGCATGTGATGGTTCGAACATGAACGGCAGCGCAATCCACGCTTTGTAA 999 0.5055 MTRRCSHCSNNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAASGSGSGSHHHHASNNPGSPGGGDTPDHAAAEGYASEDFVPGSSSTSRERKRGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVTTRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADESGDATMVQQDQPQAETEGNNPLPAPPALDEECESMDSANSNDRELALLKPDNSQSPYPLLYPTFYPPLFQLPIPCWSGYDPEPAKKKESHEVLKPTPVHSKSPINVDELVGMSKLSLGDSISDSAPSSLSLKLLEGPSRQSAFHATPACDGSNMNGSAIHAL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61555g00004 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 152 IPR017930 -
Stsc61555g00004 332 MobiDBLite consensus disorder prediction 174 188 - -
Stsc61555g00004 332 MobiDBLite consensus disorder prediction 171 195 - -
Stsc61555g00004 332 MobiDBLite consensus disorder prediction 85 104 - -
Stsc61555g00004 332 ProSiteProfiles Myb-like domain profile. 96 148 IPR001005 -
Stsc61555g00004 332 SUPERFAMILY Homeodomain-like 98 153 IPR009057 -
Stsc61555g00004 332 SMART sant 100 150 IPR001005 -
Stsc61555g00004 332 FunFam transcription factor MYB1R1 102 153 - -
Stsc61555g00004 332 Pfam Myb-like DNA-binding domain 103 148 IPR001005 -
Stsc61555g00004 332 Gene3D - 102 154 - -
Stsc61555g00004 332 ProSiteProfiles SANT domain profile. 99 152 IPR017884 -
Stsc61555g00004 332 MobiDBLite consensus disorder prediction 1 21 - -
Stsc61555g00004 332 MobiDBLite consensus disorder prediction 46 69 - -
Stsc61555g00004 332 CDD SANT 103 148 IPR001005 -
Stsc61555g00004 332 PANTHER TRANSCRIPTION FACTOR KUA1 3 270 - -
Stsc61555g00004 332 MobiDBLite consensus disorder prediction 1 18 - -
Stsc61555g00004 332 MobiDBLite consensus disorder prediction 46 78 - -
Stsc61555g00004 332 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 151 IPR006447 GO:0003677
Stsc61555g00004 332 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61555g00004 Stsc-Chr61555 16692 18790 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc61555g00004 Myb_DNA-binding 3.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61555g00004 - - ccaj:109807943 501.901