Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61555g00001 ATGGAGCAACAACAACCCCTTAACCTTAACCCAACCACTCCCCCATCACTCACCATTACCCCCTCTTCCACTTCATCATCCTCCACCGAAGCACCTTCACCTGAACCATCCATCAATTCAACACCCAAGAAGAAGCCCACTGCTAGCGGCTTCCGCGGAGTACGCATGCGCCAATGGGGCAAATGGGTCTCCGAAATCAGAGAGCCCAAGAAGAAGTCCAGAATCTGGCTCGGAACTTACGCCACTGCTGAAATGGCGGCTCGTGCCCACGACGTCGCGGCTCTTGCCATCAAAGGCCGCTCTGCTGTCCTTAACTTCCCCGAACTCGCCCCGCACCTTCCTCGTCCCGCCACCACTTCCCCGAAGGACATTCAAGCCGCCGCCGCCAAAGCAGCCGCATTCGATGACCATGCAACGGATAAAGCCGAGCCGGAACTCAGCCGAGCCGATTCCTCCTCGTCTTCTTCCCTCTCTCCTCAGAATCAAGAATCGCCGAATTTGTCGTCGTTAGACGACGATGATGACACGTTCACGGACCTCCCTGACCTCAGTGACCTGGGACTTAACTTGAATGGAATTAATGGAGGAAGTAAATTTGGTTACTCGACGTCATGGCTTATGGCTGGAGCCGACCATCTCGGCTCTCCTTTCCGGCTTGAAGACCCTTTCCAAACATGGGACTCAGAAAGTTACACGCCTTCTTTAGAAGGGTCGTTCTTAGAGTAG 726 0.5441 MEQQQPLNLNPTTPPSLTITPSSTSSSSTEAPSPEPSINSTPKKKPTASGFRGVRMRQWGKWVSEIREPKKKSRIWLGTYATAEMAARAHDVAALAIKGRSAVLNFPELAPHLPRPATTSPKDIQAAAAKAAAFDDHATDKAEPELSRADSSSSSSLSPQNQESPNLSSLDDDDDTFTDLPDLSDLGLNLNGINGGSKFGYSTSWLMAGADHLGSPFRLEDPFQTWDSESYTPSLEGSFLE 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61555g00001 241 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Stsc61555g00001 241 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Stsc61555g00001 241 CDD AP2 49 109 IPR001471 GO:0003700|GO:0006355
Stsc61555g00001 241 SUPERFAMILY DNA-binding domain 49 108 IPR016177 GO:0003677
Stsc61555g00001 241 MobiDBLite consensus disorder prediction 225 241 - -
Stsc61555g00001 241 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Stsc61555g00001 241 MobiDBLite consensus disorder prediction 1 46 - -
Stsc61555g00001 241 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Stsc61555g00001 241 MobiDBLite consensus disorder prediction 1 53 - -
Stsc61555g00001 241 MobiDBLite consensus disorder prediction 148 167 - -
Stsc61555g00001 241 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Stsc61555g00001 241 MobiDBLite consensus disorder prediction 217 241 - -
Stsc61555g00001 241 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Stsc61555g00001 241 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Stsc61555g00001 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 184 - -
Stsc61555g00001 241 MobiDBLite consensus disorder prediction 114 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61555g00001 Stsc-Chr61555 955 1812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61555g00001 43 223 AP2-EREBP Transcription Factor Family AT2G44940 47.115 4.94e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc61555g00001 AP2 5.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61555g00001 - - ahf:112747744 190.66