Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61531g00003 ATGCAACTCAATCACCTTTGCATTGTTCTACCACCAAATTCCAGTGAAATGGATCAACCTGATCAGAAGGCTTTTCAACTACCAAGGAAACAAGTTAAGGCCGAAAACAAAAAGCCTCCTCGTAGAGGTTGTGTGAGGCAAATGGTTTCTTTGGTCCAAGATTCTTTGAGCAAGTTGACAATTTGCAAACATGGATGGAAGAAAGAGAAGAGCAGCGCGTTTCACGACATGGACGGGGTGCAAGTTTCTGTCAAGATAGGGAGGGACAACCCCAGGATTTTCAGCTATGCAGAGCTCTTCATAGGGTCCAAAGGTTTCAGTGAAGACCAAGTTCTTGGCAGTGGAGGGTTCGGCAAAGTGTACAAGGCTGTTTTGCCGAGCGACGGAACGATTGTGGCCGTGAAATGTTGCTTGGCGGGGAAAGGGAAGCAATTTGAGAAGAGTTTTGCAGCAGAGTTAACCGCGGTTGCAGATCTTCGCCACAAGAATCTTGTCAGACTGAGGGGATGGTGTGTTCATGAAGATCAGTTGCACCTTGTTTATGACTACATGCCTAACAGCAGCCTCGACCGTATACTCTTCCGGAAGCCGGAGAATTCAAAGACTGGGCTTCTTGATTGGGGACAGAGAATAAGAATTGTAAAAGGTTTGGCAGCTGCATTGCATTATCTCCATGAACAACTGGAAACTCAAATCATTCATAGGGATGTGAAGACCAGCAATGTCATGCTTGATTCACATTTCAATGCCCGATTAGGTGACTTTGGCATGGCAAGATGGCTAGAACATGAACTCGAGTACAAGCCAAGGAAGATGTCGACTAGAATTGACCATTTCCGGTTGGGAGACACATCAAGAATCGGAGGAACGATTGGGTATCTGCCCCCAGAAAGCTTGCAGAAAGCAAGCCATGCTACTTCCAAATCTGATGTCTTCAGCTTCGGAATAGTTGTGCTAGAAGTCGTTTCTGGAAGGAGAGCCATAGACCTTGCTTACCCAGATGATGAAATTATTTTGCTCGATTGGATCAGAAGGCTCTCCGATGTAGGGAAGCTTCTGGATGCAGGGGATACACGGCTACCAGATGGTTCCTATAAGCTTTCAGAGATGCAGCATCTCATTCACATTGGTCTTCTCTGCACACTCCATGAACCGCAGCTGCGCCCAAGCATGAAATGGATTGTGGAAGCACTTTCCGACGTCTCATACAAGTTGCCAGTCCTCCCTTCATTTCATTCCCACCCTCTGTACATCTCTTTGTCCTCCGCATCCGAGACTAGTCGCAGCAGCACTAGTGGCAATAGCTTTGCTACGGAGAATACTAGCATCATAGCTAACTATACTTCATCAAACTATGTCACAGCTGCAGGGGAAACAGTATACATAACTGCTGAACACAAAAACAGTGAGATCATATCCTCCAGGAGCACGAATCAACATCTGCAATTCCCGGTGCTAGAGACTCCAAGGGAAATATCATTCAAGGAAATTATTTCAGCCACAGACAATTTTTCAGATTCAAGAAGGGTGGCAGAGCTAGACTTTGGAACTGCTTATCATGGCATCCTTGCTGACAATTGCCATGTTTTGGTGAAACGCCTAGGGATGAAGACATGCCCTGCCTTGCGTGACAGGTTCTCTAACGAGCTCCAGAATCTAGGCAGGCTTCGACATAGGAATTTGGTGCAACTCCGTGGATGGTGCACTGAGCAAGGCGAGATGCTTGTTGTGTATGACTACTCAGCAAGTAGAATACTAAGTCAAGTGCTTCTCTGTCATAGTAATCATAGAACTGGATATTCTGTCCTTCAATGGCATCACAGATATAACATAGTGAAAACACTTGCCTGTGCAGTTCTGTATCTACATGAGGAATGGGATGAGCAAGTCATTCACAGAAATATTACCTCTTCAGCTGTAATTCTTGAACAAGATATGAACCCCAGACTGGGTTGTTTTGCTCTTGCTGAATTTTTGTCAAGGAATGAACATGGGCATCACGTAATCACAGACACTAGCAAATCGGCTCGCGGCATTTTTGGCTACATGTCACCGGAATATCTGGAATCCGGTGAAGCAACCTCAGCAGCTGATGTATACAGTTTTGGAGTTGTGGTGCTTGAAGTTGTAAGTGGACAGCTTGCAGTAGACTTTCGGCAGCCGGAGGTGCTGTTGGTGAAGAAGGTTCATGAATTTGAGATGCAAAAGAGGCCATTGAAGGAATTCGTAGACAAAAGACTCAATGGAGAGTACAATGACAAAGAACTGCTGAGATTGATAAGACTGGGAATTGCATGCACCCGTTGCGACCCACAATTAAGACCAAGCATGAGGCAAATAGTAAGCATCCTTGATGGCAACGACAACTTACTCGTCGAAGGGAACACAGAGAGCAGGGAAGAATGGAGAGAAAGAAATGCTATTACTTTGTCACTGATTAGGAGAATCCAAGCTCTAGGAATACAGTAA 2469 0.454 MQLNHLCIVLPPNSSEMDQPDQKAFQLPRKQVKAENKKPPRRGCVRQMVSLVQDSLSKLTICKHGWKKEKSSAFHDMDGVQVSVKIGRDNPRIFSYAELFIGSKGFSEDQVLGSGGFGKVYKAVLPSDGTIVAVKCCLAGKGKQFEKSFAAELTAVADLRHKNLVRLRGWCVHEDQLHLVYDYMPNSSLDRILFRKPENSKTGLLDWGQRIRIVKGLAAALHYLHEQLETQIIHRDVKTSNVMLDSHFNARLGDFGMARWLEHELEYKPRKMSTRIDHFRLGDTSRIGGTIGYLPPESLQKASHATSKSDVFSFGIVVLEVVSGRRAIDLAYPDDEIILLDWIRRLSDVGKLLDAGDTRLPDGSYKLSEMQHLIHIGLLCTLHEPQLRPSMKWIVEALSDVSYKLPVLPSFHSHPLYISLSSASETSRSSTSGNSFATENTSIIANYTSSNYVTAAGETVYITAEHKNSEIISSRSTNQHLQFPVLETPREISFKEIISATDNFSDSRRVAELDFGTAYHGILADNCHVLVKRLGMKTCPALRDRFSNELQNLGRLRHRNLVQLRGWCTEQGEMLVVYDYSASRILSQVLLCHSNHRTGYSVLQWHHRYNIVKTLACAVLYLHEEWDEQVIHRNITSSAVILEQDMNPRLGCFALAEFLSRNEHGHHVITDTSKSARGIFGYMSPEYLESGEATSAADVYSFGVVVLEVVSGQLAVDFRQPEVLLVKKVHEFEMQKRPLKEFVDKRLNGEYNDKELLRLIRLGIACTRCDPQLRPSMRQIVSILDGNDNLLVEGNTESREEWRERNAITLSLIRRIQALGIQ 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61531g00003 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Stsc61531g00003 822 Gene3D Transferase(Phosphotransferase) domain 1 585 805 - -
Stsc61531g00003 822 FunFam Receptor like protein kinase S.2 80 183 - -
Stsc61531g00003 822 Gene3D Phosphorylase Kinase; domain 1 463 580 - -
Stsc61531g00003 822 PANTHER - 71 399 - -
Stsc61531g00003 822 FunFam Receptor like protein kinase S.2 184 404 - -
Stsc61531g00003 822 SMART serkin_6 106 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61531g00003 822 ProSitePatterns Protein kinases ATP-binding region signature. 112 141 IPR017441 GO:0005524
Stsc61531g00003 822 FunFam Receptor like protein kinase S.2 582 807 - -
Stsc61531g00003 822 Gene3D Phosphorylase Kinase; domain 1 78 183 - -
Stsc61531g00003 822 SUPERFAMILY Protein kinase-like (PK-like) 477 784 IPR011009 -
Stsc61531g00003 822 CDD STKc_IRAK 515 786 - -
Stsc61531g00003 822 Pfam Protein tyrosine and serine/threonine kinase 510 784 IPR001245 GO:0004672|GO:0006468
Stsc61531g00003 822 SUPERFAMILY Protein kinase-like (PK-like) 90 430 IPR011009 -
Stsc61531g00003 822 Gene3D Transferase(Phosphotransferase) domain 1 184 405 - -
Stsc61531g00003 822 ProSiteProfiles Protein kinase domain profile. 106 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61531g00003 822 ProSiteProfiles Protein kinase domain profile. 504 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61531g00003 822 Pfam Protein kinase domain 107 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61531g00003 Stsc-Chr61531 7607 10579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61531g00003 482 790 Receptor kinase-like Gene Family AT3G59740 32.692 2.74e-46 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc61531g00003 Pkinase 8.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61531g00003 - - gmx:100796108 1296.95