Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61515g00001 ATGCTCCATAGAAGCTGCATTTTGCTACTGTGTGTTGTTGGTTCCATGTTAGCACTTGAAGGAGCTGCTGCAATGCTGAACCTAACTCTTCCAGGACAACACCCTGACCCTGAAGCTGTTGCCAATGAAGTCCACAGGAAGGTGAATGGTTCACTTGCAAGAAGGGAAATGCTGCAATCAGTGAGTTCTTGCCTAACAGGTAACCCCATAGATGATTGCTGGAAATGTGACCCAGATTGGCCCAACAACAGGCAGAGGCTAGCAGACTGCGCCATTGGGTTTGGCCAACATGCCAAGGGAGGAAAGGATGGGGAGTTCTACATTGTCACAGATTCCTCAGATGATGATGCTGTGAACCCTAAGCCAGGAACTCTCAGATATGCTGTCATACAGAATGAGCCTCTTTGGATTGTGTTCCCAAGTAACATGATGATTAAGCTCTCTCAAGAACTCATCTTCAACAGTTACAAGACCCTTGATGGCCGTGGTGCTGATGTCCACATTGTTGGTGGTGGATGCATTACTCTCCAGTATATAAGTAATGTTATCATACACAACATTCATATCCACCATTGTCACCCTTCAGGGAACACAAATGTCCGTTCAAGCCCTGACCATTACGGGTACCGGACGCTATCGGATGGCGATGGAATCTCCATATTCGGGGCCAAAGACATATGGATCGACCACTGCACGCTGTCACGGTGCAAGGACGGGCTCATCGACGCAGTCATGGGTTCCACCGGAATCACAATCTCCAACAACTACTTCTCCCACCACAATGAAGTCATGCTCTTAGGCCACAGTGATGACTACCTGCCAGACTCCGGCATGCAGGTGACCATTGCTTTCAACCATTTCGGCCCCATGCTCGTCCAGCGCATGCCACGCTGCCGCCGGGGCTACATCCATGTGGTCAACAATGACTTCACACGGTGGGAGATGTATGCCATTGGAGGCAGTGGGGAGCCCACCATTAACAGCCAGGGGAACCGCTACACGGCACCCCTGAACCCCTTTGCAAAGGAGGTAACCAAGAGGGTTGACACTGCAGAGGGTAAGTGGAAGGGCTGGAATTGGAGGTCGGAGGGGGATATCATGGTCAATGGTGCGTTTTTTGTAGCCTCTGGGGAGGGTGTTGAGGTTAAGTATGAGAAGGCTTATAGTGTTGAGCCTAAGTCTGCTGATAGGATTTCTCAGCTTACCATGGCTGCCGGCGTTCTCGGCGTTGCCAAGGACAACAGTGTGGGAATGTGGAGCAAAGGACCCAACAGCCAGGGCCAAGGCCAGGGTCAGGGCGACGGAGTCATATGGTTGGTGCCGGAATACAATGACGACTATTCGCGGAGCGCAAGGGTGGTGCTGCCATCTTCCCTGACTTTCACCTTTGTGTGGTCTTTCCTGCTCTTTTTGAAACTATCTTGTTACAACATACCATCAACGGTTATTCTATAA 1455 0.5065 MLHRSCILLLCVVGSMLALEGAAAMLNLTLPGQHPDPEAVANEVHRKVNGSLARREMLQSVSSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQHAKGGKDGEFYIVTDSSDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPDHYGYRTLSDGDGISIFGAKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGPMLVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGEPTINSQGNRYTAPLNPFAKEVTKRVDTAEGKWKGWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPKSADRISQLTMAAGVLGVAKDNSVGMWSKGPNSQGQGQGQGDGVIWLVPEYNDDYSRSARVVLPSSLTFTFVWSFLLFLKLSCYNIPSTVIL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61515g00001 484 Gene3D - 67 409 IPR012334 -
Stsc61515g00001 484 PRINTS Pollen allergen Amb family signature 90 107 IPR018082 -
Stsc61515g00001 484 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Stsc61515g00001 484 PRINTS Pollen allergen Amb family signature 150 166 IPR018082 -
Stsc61515g00001 484 PRINTS Pollen allergen Amb family signature 114 139 IPR018082 -
Stsc61515g00001 484 PRINTS Pollen allergen Amb family signature 214 235 IPR018082 -
Stsc61515g00001 484 PRINTS Pollen allergen Amb family signature 387 410 IPR018082 -
Stsc61515g00001 484 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
Stsc61515g00001 484 PRINTS Pollen allergen Amb family signature 358 382 IPR018082 -
Stsc61515g00001 484 Pfam Pectate lyase 152 325 IPR002022 -
Stsc61515g00001 484 SMART amb_all 142 339 IPR002022 -
Stsc61515g00001 484 PANTHER PECTATE LYASE 18-RELATED 31 412 IPR045032 GO:0030570
Stsc61515g00001 484 FunFam Pectate lyase 67 409 - -
Stsc61515g00001 484 SUPERFAMILY Pectin lyase-like 60 396 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61515g00001 Stsc-Chr61515 317 2540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61515g00001 1 420 Polysaccharide Lyase AT3G53190 77.855 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61515g00001 K01728 - gmx:100775595 762.296