Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61509g00001 ATGGGAGGAATAGGTAAAACTACTATCGCTGAGGTCTTATTTGACAAATATTCTTCTCAATATGAAGGCAGTTGCATGTTGAAAAATGTAAGAGAAGAGTCACAAAAGTTTGGCGTGGTTTATTTGTGCGACAAACTTGAATCGGAGTTATTAGCAGGAGAAAGCGGATCATCCAAAGCAAAATCCACTCTTTCCCGGAGAAAGTTAAGTCGAAAAAAGGTTTTCATAGTGCTTGATGATGTGGATACATTAAGGAAGTTAAAAGATCTTGTAACACAATCTTTGGGACCAGGTAGTAGGATCATTGTAACAACCAGAGACAAGCATGTCCTTACAAATGTTCATGATACATACGAGCTCAAATGCTTGAACTTTGAAAATTCCCTTAAGCTTTTTAGCTTGAGGGCTTTTGGAAAAGTCTATCCTGAAGCTCAATATGAAAAGTTTTCGAAAATAGCAGTGAATTATGCAAATGGCATCCCATTAGCTTTAGAAGTTTTGGGTTCTTATTTACACTCTAAAACCATACAAGAATGGGAGAGTGCTTTGGGAAAACTCAAAATTTATCCTAATATAGAGATTTTTGATGTCTTAAAATTGAGTTATGAAGGGCTAGATGAGTTAGAGCAGAATATATTTCTTGACATTGTATTCTTTTTCAAAGGAAAAGATAAAGATGTTGTCATACCATTTCTAGAATCGTGTGGTTTTTTCCTTACTGATGGCATAGGCAATCTTTCTCGTAAAGCTCTGATAACTATTTCAAAGTATAATGAAATAGAAATGCATGACTTGATAGAACAAATGGGTCGAGAAATAGTTCGTCGAGAATCAATTAAAGACCCAGGAAGACGTAGCCGCTTAAGTGAACCTGAGGATGTCTACAATGTGTTGAATGATAATAAGGGAACAGAGTCAGTTGAGGCCATTATGTTGGACATGTGTCGAATTAAAAGAGATCTACATTTAGATGGTGACACTTTTAAAAAGATGCCTGATACAAGGTTTCTCAAAATTTATGATTCATGGAGGAACCAAAAGTTAGGTAATGTGTACTTTTCTTCAACTCCGGAGTCATTTCCAAAGGGACTAAGATACTTGCAGTGGAGTGGGTGGCCTCTCAAGTCTCTTCCTCCAAATTTTTGTGCTGAGAAGCTTGTTGAACTTTCTATGCCATGGAGCAAAGTTTCTAAACTTTGGGATGGAGTTCAGGATCTTGTAAATTTAAAGAGGATTAACCTTAAGGGATGCGAGAAGCTGGTGGAGCTCCCTGATTTCACTCAGGCAACAAACCTTGAAGAAATAGATCTTGATGAATGTGCAAGGTTGGTGGAACTTCATCCATCCATTTTATGCATCCACAAGCTCAAAACCTTGAGTGTTTTTTGTTGCAAAGCTCTAGAGAGTCTTAAAAGCAAGATCCATTTGAAATCTCTTGAAAAACTCCATGCTGGACACTGCTCAAACATGATGGAATTTTCTGTGTCAACAGAGGAGCTAACAAGTTTGGATTTGGGTAGCACAATAATTGATAAGTTAGACTCATCAGTTGGCCGTCTCAGTAAGCTTATACAGTTGAATTTATTTTATGTGAGACTTGAAACTCTTCCAAATGAGCTGTGTCTCTTAGTATCCCTTGAGGAACTGAATCTTAAAAGATGCGAACAGTTGATCGATCCCAATATGAAAGCCTTATCGCGGTTAAATTATCTCAACATATCAGATTGCTGTGGCGTTGGTGGCACAATTAGTCCCACATCGCCTAGTACACATAGAGGGAAGGGGTTATACCCCTTATATATAGAACCTTAG 1812 0.3764 MGGIGKTTIAEVLFDKYSSQYEGSCMLKNVREESQKFGVVYLCDKLESELLAGESGSSKAKSTLSRRKLSRKKVFIVLDDVDTLRKLKDLVTQSLGPGSRIIVTTRDKHVLTNVHDTYELKCLNFENSLKLFSLRAFGKVYPEAQYEKFSKIAVNYANGIPLALEVLGSYLHSKTIQEWESALGKLKIYPNIEIFDVLKLSYEGLDELEQNIFLDIVFFFKGKDKDVVIPFLESCGFFLTDGIGNLSRKALITISKYNEIEMHDLIEQMGREIVRRESIKDPGRRSRLSEPEDVYNVLNDNKGTESVEAIMLDMCRIKRDLHLDGDTFKKMPDTRFLKIYDSWRNQKLGNVYFSSTPESFPKGLRYLQWSGWPLKSLPPNFCAEKLVELSMPWSKVSKLWDGVQDLVNLKRINLKGCEKLVELPDFTQATNLEEIDLDECARLVELHPSILCIHKLKTLSVFCCKALESLKSKIHLKSLEKLHAGHCSNMMEFSVSTEELTSLDLGSTIIDKLDSSVGRLSKLIQLNLFYVRLETLPNELCLLVSLEELNLKRCEQLIDPNMKALSRLNYLNISDCCGVGGTISPTSPSTHRGKGLYPLYIEP 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61509g00001 603 Gene3D - 122 206 IPR042197 -
Stsc61509g00001 603 Gene3D Ribonuclease Inhibitor 298 497 IPR032675 -
Stsc61509g00001 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 216 IPR027417 -
Stsc61509g00001 603 Gene3D Ribonuclease Inhibitor 498 589 IPR032675 -
Stsc61509g00001 603 SUPERFAMILY "Winged helix" DNA-binding domain 193 298 IPR036390 -
Stsc61509g00001 603 SUPERFAMILY L domain-like 334 577 - -
Stsc61509g00001 603 Gene3D - 1 120 IPR027417 -
Stsc61509g00001 603 PRINTS Disease resistance protein signature 157 171 - -
Stsc61509g00001 603 PRINTS Disease resistance protein signature 404 420 - -
Stsc61509g00001 603 PRINTS Disease resistance protein signature 68 82 - -
Stsc61509g00001 603 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 493 IPR044974 GO:0006952
Stsc61509g00001 603 Pfam Leucine Rich Repeat 385 404 IPR011713 -
Stsc61509g00001 603 Pfam NB-ARC domain 1 187 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61509g00001 Stsc-Chr61509 163 2156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61509g00001 3 554 WRKY Transcription Factor Family AT4G12020 37.148 3.98e-86 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61509g00001 - - ahf:112728432 844.343