Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61503g00001 ATGGCATCCGCCTCTTCTTCAAGCTCAGTCCCACCACAAACACCAAGATCATCATACACATATCACGTGTTCTTGAGTTTCAGAGGAGAAGACACTCACAATGGATTCACTAGCCATCTCTATGCCGCCCTTAACAGAAAGGGACTCACAACCTACAAAGATGACAAGAGCCTTCGCAAAGGCGATGTTATTTCAGATGAACTTGTCAAAGCAATTGAAGAGTCTATGTTTGCAGTCATTGTTTTCTCACCAGACTACACTTCCTCCAGTTGGTGCTTGGATGAGCTCTGCAAGATCCTTGACTGCAACAATAAGCTGGGGCTTCAGATGGTGGAAGTGTTCTACGGTGTGGAGCACCAACAGAGACATGACTTTGAAAAGGTTAAAAGATGGAGAGATGCGTTAAAACAAGTTGCTGCTTATTCTGGTTGGAGCTCCAAAAATCAGGACGAGGCAGTACTTGTGGAAAACATTGCTCAACATATATTTGAAACATTGATTCCAAAGTTGCCTTCTTCAATGAAAAATCTTGTGGGGATTGAATCAAGAGTGGAACAAGTAATTTGTCAAACAGGCCTTGGATTGAATGATGTTCGCTACATCGGCATATGGGGAATGGGCGGCATAGGTAAGACAACTATTGCTAGAGCCGTATATGAAACCATTCGTTGTACATTTGAAGTTACTTGCTTTCTTGCTGATGTAAGGAATCAATGTGAGAAAATAGATATAGTCCAAGTACAAAAACAACTCCTTGATCAAATGCATATAGGTTCAGCTACTGTTTTTAGCGAGTATGATGGGAGAACAATAATTCAAAACTCTTTACGTCTCAAAAAGGTTCTTCTTGTTCTTGATGATGTAAATCATGTAAAGCAATTAGAGAATTTGGCTGGGGAGCAAGATTGGTTTGGTTCTGGCAGCAGAATTATCATTACAACCAGAGACATACATGTGCTAAAGGAACATGAGGTGGAAGAAACTTATAATGTTGAAGGGTTAGTGGAAAGTGAAGCCTTTAACCTCTTTTGTTCGAAAGCTTTTAAACGGTCAGAACCTATAGAAGAGTTTTTGGATTTGTCTAAAAAAGTGGTGAATTATAGTGGTGGTCTTCCATTGGCACTTAAAGTATTAGGTTCCCATCTTAAAGGTAGATCTATTGAGGTTTGGCGTAGTGCTATTGCAAAAATAAAGAAGTCTTCACATTCTGATATTATTGATGTATTGAGAATAAGCTATGATGGTTTAGATTCTATGGAAAAAAATATTTTTCTAGATATTGCTTGTTTCTTTAGAGGATGGATTAAAGATAAAGTAACAAAGATATTAAAAGGATGTGGTTATGATGTTGAAATTGGTATGGATATTTTGATTAATAGATCATTGATCACATTAACGAATTGGAATGGGTATGACATTTTGGGGATGCATGATCTGGTTGAAGAAATGGGCAAACAAATTGTAATTCAAGAATCTCCAAATGATGCTAGTAAGCGTAGCAGACTGTGGTGTTACGAGCATATTGACTTTGTACTTGCTCAAAAGAAGGAAATTGAAGCAACTCATGGCATCGTTCTTGATGATCCGCTGAGGTCATTCAATCCTACATTTGATTGGAGAGATTTGGATCTGGGAGGTTTATCATTCTCAAATATATGCCATCTACAGCTTCTCATCATAGATGTAGCAAATGCTCCCATTCTCTGCAATATTCCTTGCACATTAAAGTTTTTCCGGTGGAGAAATTGTCCAATGGAAAATCTACCCTTTGCAGATAATCAACGCTATGAACTTGTTGAAATTGATATGTCTTATAGCAATATTGTACAAATATGGGATGCAAAGAAGGTAGACCCTTTCATCAACAGCTCTATCAAATTTAATTTCACTACATTAACATTTAGAGCAAAATTAGTAACCATGTGA 1926 0.3764 MASASSSSSVPPQTPRSSYTYHVFLSFRGEDTHNGFTSHLYAALNRKGLTTYKDDKSLRKGDVISDELVKAIEESMFAVIVFSPDYTSSSWCLDELCKILDCNNKLGLQMVEVFYGVEHQQRHDFEKVKRWRDALKQVAAYSGWSSKNQDEAVLVENIAQHIFETLIPKLPSSMKNLVGIESRVEQVICQTGLGLNDVRYIGIWGMGGIGKTTIARAVYETIRCTFEVTCFLADVRNQCEKIDIVQVQKQLLDQMHIGSATVFSEYDGRTIIQNSLRLKKVLLVLDDVNHVKQLENLAGEQDWFGSGSRIIITTRDIHVLKEHEVEETYNVEGLVESEAFNLFCSKAFKRSEPIEEFLDLSKKVVNYSGGLPLALKVLGSHLKGRSIEVWRSAIAKIKKSSHSDIIDVLRISYDGLDSMEKNIFLDIACFFRGWIKDKVTKILKGCGYDVEIGMDILINRSLITLTNWNGYDILGMHDLVEEMGKQIVIQESPNDASKRSRLWCYEHIDFVLAQKKEIEATHGIVLDDPLRSFNPTFDWRDLDLGGLSFSNICHLQLLIIDVANAPILCNIPCTLKFFRWRNCPMENLPFADNQRYELVEIDMSYSNIVQIWDAKKVDPFINSSIKFNFTTLTFRAKLVTM 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61503g00001 641 FunFam Disease resistance protein (TIR-NBS-LRR class) 335 417 - -
Stsc61503g00001 641 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 622 IPR044974 GO:0006952
Stsc61503g00001 641 Pfam NB-ARC domain 196 403 IPR002182 GO:0043531
Stsc61503g00001 641 Pfam TIR domain 21 179 IPR000157 GO:0007165
Stsc61503g00001 641 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 144 IPR035897 -
Stsc61503g00001 641 PRINTS Disease resistance protein signature 368 382 - -
Stsc61503g00001 641 PRINTS Disease resistance protein signature 200 215 - -
Stsc61503g00001 641 PRINTS Disease resistance protein signature 275 289 - -
Stsc61503g00001 641 SUPERFAMILY "Winged helix" DNA-binding domain 404 511 IPR036390 -
Stsc61503g00001 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 427 IPR027417 -
Stsc61503g00001 641 Gene3D - 334 417 IPR042197 -
Stsc61503g00001 641 Gene3D - 166 331 IPR027417 -
Stsc61503g00001 641 ProSiteProfiles TIR domain profile. 19 166 IPR000157 GO:0007165
Stsc61503g00001 641 Gene3D - 14 165 IPR035897 -
Stsc61503g00001 641 SMART till_3 20 141 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61503g00001 Stsc-Chr61503 220 16090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61503g00001 178 616 WRKY Transcription Factor Family AT5G45050 32.911 8.29e-67 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61503g00001 - - adu:107485814 870.922