Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61502g00002 ATGGAGTTGGCCGCCAAGCTCCACCACCTCGACCTCACTTCCACCTTCCTCACCGGCGGCGGCGTCATCTTCGACCCTCCTAAGCCTCTCTCCCGCCCGCCCCTTCATCTTCGCCCAGTTCGCATCAACAACACTCATTTCACAGCAACAACAAGAAGAAGAAGATTCTTCGACCCGGTAAGACCTACCAATTCCACTACCACCCTCCGTTTCTCCGCCGTGGCCACAGACGACACCTCCCTCGCCGAAACGACAACCGAACAACAAGACGACATCGAGTCCCTCTTCTCCGAGCCTTCATCCAACGATTACGACTTCGATAAACGGCGCGGCAACAAGCAATCCACTACGGGCGCTTCGAGCGTCTCTTCGGGGGTAAAATTGGAAAACGTTACCAAGAGCTACAAGGGTGTAACGGTGTTGAAAGACGTGAGCTGGGAAGTGAAGAAGGGAGAGAAAGTGGGTCTCGTTGGCGTTAACGGTGCCGGTAAAACCACACAGATGAGGATTATTGCGGGTCAAGAACAACCCGATTCAGGTAACGTCATAAAGGCCAAACCAAACATGAAAATCGCGTTCTTGAGCCAGGAATTCGAGGTTTCGCCTGGTAAGACGGTGAGTGAAGAGTTCATGAGCGCGTTCAAGGAGGAGATGGAGATATCGGTGAAGCTTGACAAGGTTCAGAAGGCTCTAGAAGGTGCCGTGAATGACATGGATTTGATGGGGAGGCTTCTTGATGAGTTTGATTTGCTTCAGAGAAAGGCACAGGCTTTGGATTTGGATGAGATTGATGCCAAGATAAGCAAGTTGATGCCTGAGCTTGGGTTTGCAGCTGAAGATTCTGATAGGTTGGTTGCTTCTTTTAGCAGTGGCTGGCAGATGAGAATGTCTCTCGGCAAAATTTTGCTTCAGGAGCCAGATTTGTTGCTGTTGGATGAGCCCACAAATCACCTTGACCTCGATACCATTGAGTGGCTCGAAGAGTATCTTAACAAGCAGGATGTCCCCATGGTTATCATTTCCCATGACAGGGCATTTCTTGATCAGCTCTGCACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGGAATTATTCTCAGTTTATAATTTCTAAGGCAGCATGGATTGAGGCACAGTATGCTGCATGGGAGAAGCAGCAAAAAGAAATTGAGCATACCAAAGACTTAATAAGTAGGTTAGGCGCTGGAGCAAATTCCGGCCGTGCTTCATCTGCTGAGAAGAAACTGGAGAGACTTCAGGATGAGGAACTAGTAGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTCGTAACAGTTAATAACTTGGATTTTGCCTTTGAGGATAAGACACTTTTCAAGAAGGCAAATCTTACAATTGAAAGGGGAGAAAAGATTGCAATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATAATGGGTATACAGAAGCCAATGGGGGGTGAGGTTGTGCTTGGGGAGCATAATGTGTTACCTAACTATTTCGAGCAAAATCAGGCTGAGGCACTGGATCTGGACAAGACAGTGCTTCAGACGGTAGAAGAAGCTGCAGAGGACTGGAAGATTGATGATATCAAAGGACTTCTTGGGCGATGTAATTTTAAAGCCGATATGCTTGACCGAAAAGTTTCCTTATTGAGTGGTGGTGAGAAGGCACGGTTGGCTTTTTGCAAATTCATGGTAAAGCCATCAACTCTACTTGTGCTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGGAAGCAATAAATGAGTATGAGGGCACTGTTATCACTGTGTCTCATGATCGATACTTTATAAGACAAATAGTTAATAGGGTGATAGAAGTTAAAGATGCTACCTTACAGGATTATGCAGGCGATTACAATTATTATTTAGAGAAGAACCTTGATGCTAGGGAGAGAGAGCTCGAACGCGAAGCAGAGCTCGAAGACAAAGCTCCTAAAGTGAAGGCCAAGTCTAAGATGTCTAAGGCTGAGAAAGAAGCACGGAAGAAACAAAAGATGCAAGCCTTTCAGGCAGCAAAACAGAAGTCTAAAGGCGCCAAGAATGCCAAAAGGTGGAAGTGA 2163 0.4623 MELAAKLHHLDLTSTFLTGGGVIFDPPKPLSRPPLHLRPVRINNTHFTATTRRRRFFDPVRPTNSTTTLRFSAVATDDTSLAETTTEQQDDIESLFSEPSSNDYDFDKRRGNKQSTTGASSVSSGVKLENVTKSYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGQEQPDSGNVIKAKPNMKIAFLSQEFEVSPGKTVSEEFMSAFKEEMEISVKLDKVQKALEGAVNDMDLMGRLLDEFDLLQRKAQALDLDEIDAKISKLMPELGFAAEDSDRLVASFSSGWQMRMSLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQFIISKAAWIEAQYAAWEKQQKEIEHTKDLISRLGAGANSGRASSAEKKLERLQDEELVEKPFERKQMKIRFPERGRSGRSVVTVNNLDFAFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGIQKPMGGEVVLGEHNVLPNYFEQNQAEALDLDKTVLQTVEEAAEDWKIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTVITVSHDRYFIRQIVNRVIEVKDATLQDYAGDYNYYLEKNLDARERELEREAELEDKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGAKNAKRWK 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61502g00002 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 361 IPR027417 -
Stsc61502g00002 720 Coils Coil 680 709 - -
Stsc61502g00002 720 CDD ABCF_EF-3 453 643 - -
Stsc61502g00002 720 ProSitePatterns ABC transporters family signature. 572 586 IPR017871 GO:0005524|GO:0016887
Stsc61502g00002 720 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 126 384 IPR003439 GO:0005524
Stsc61502g00002 720 MobiDBLite consensus disorder prediction 78 124 - -
Stsc61502g00002 720 Gene3D - 415 684 IPR027417 -
Stsc61502g00002 720 MobiDBLite consensus disorder prediction 78 101 - -
Stsc61502g00002 720 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 453 668 IPR003439 GO:0005524
Stsc61502g00002 720 MobiDBLite consensus disorder prediction 670 720 - -
Stsc61502g00002 720 Gene3D - 122 407 IPR027417 -
Stsc61502g00002 720 FunFam ABC transporter ATP-binding protein 413 686 - -
Stsc61502g00002 720 Pfam ABC transporter 141 316 IPR003439 GO:0005524
Stsc61502g00002 720 MobiDBLite consensus disorder prediction 670 700 - -
Stsc61502g00002 720 FunFam Putative ABC transporter ATP-binding component 127 411 - -
Stsc61502g00002 720 Pfam ABC transporter 355 442 IPR032781 -
Stsc61502g00002 720 CDD ABCF_EF-3 126 356 - -
Stsc61502g00002 720 SMART AAA_5 477 645 IPR003593 GO:0016887
Stsc61502g00002 720 SMART AAA_5 150 365 IPR003593 GO:0016887
Stsc61502g00002 720 Pfam ABC transporter 469 600 IPR003439 GO:0005524
Stsc61502g00002 720 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 125 713 - -
Stsc61502g00002 720 ProSitePatterns ABC transporters family signature. 288 302 IPR017871 GO:0005524|GO:0016887
Stsc61502g00002 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 432 657 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61502g00002 Stsc-Chr61502 9488 13965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61502g00002 450 670 Calmodulin-binding Proteins AT2G36910 26.316 3.92e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61502g00002 - - adu:107470294 1263.44