Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc614g00003 ATGATCAATTCACTATGTGGAAGCTCAGTGTCTCTGAAAAGTGAGAATTCAAGCACAAAGCTACAACCCACTTCTTCAAATGACTCAGTTTTACAATCCAACAAGAAAAGCAATAATGCCACACAATCCTCTGCTGATTTATTAGAGCAGAATAATGATAACAATAACAATACCCTAACACCACCAAGCTTAAACCTCCCAGCACTGAAATTTGACCTTGATGGAGGAGGAGATGTTGAAGTCCAATCACCAGATAGTTCAATGTGGGAATCCTTCTTCTCTGATCAGTTAGATGCTGATTTCATGATGTGTTCCCCAGTCAGGAATGTCCCTTCCCCACAACAACAACAACCACAAGCCTCAACTTACAATTGCAACTACAACTACGCTCATTCAATGCAAGCACAAAGCTTTTCCGGCTGCTCCCCGCCGCGGTTTTCACCGCAGATCGGGGCCTATAACAGCGGCGGCGGAAGCAAAGGGAAAGGGCTTAGTCCACTCCACAGGGTGTTCAACTCGCCAAACAACCAGTACATGCAGCATGTTGAGAATCTTTCACTGCCTGCAATTGAGGAGTTATTGGAAGAGTTTCAACAAGGGGAATACTCATCGTCCATCACCGCCGCGAATAACAGCAGCAAGGTTGGCGACGGTTCTGATATCGTGGGTACTTCTTCTGAGTGCTTTGACTTGGGGAACTCGATTCCTTCCATCTTGGGGAATTTGATTCCCTCGGGGAGTGAAGAGTCGTCGGTCCAAGATAATAATGAGCTCCACCATCACATGGGTTCCATGGTTAGTGCGTCGCTTTCGCAAGCGCTGCAACAAGAACGGTACCATGAGAAGCAGCAGAAGCAACAAGCACAACAACTTCAACAGCAGCAGCAGCATCAACAGCATCAAAATTTGATGGTGCCTATTCCAATCGGACTAGAGCAGGAGCAAGACAGTGGGCTGCAACTGGTGCACCTACTTCTAGCATGTGCAGAGGCAGTGGCCAAAGACGAATACATGCTTGCAAGGAGATACCTTCAACACCTCAACCGAGTCGTAACACCCCTTGGCGACTCCATGCAACGCGTCGCTTCATGCTTCACTGAGTCCCTCAGCGCAAGGCTCGCCACAACACTCACCACAAAGTCATCAACATCCTCCTCCAATGGCAAGCCCATACCTTCATCCTCGTCTTCTTCGTCATCCTCATCACTCTCCACTTTCCCACATTCAAACCCCATGGAAGTCCTCAAGATCTACCAGATCGTGTACCAGGCCTGTCCCTACGTCAAATTCGCTCACTTCACCGCCAATCAGGCAATCTTCGAGGCCTTCGAGGGCGAAGAACGGGTCCACGTCATAGACCTGGACATCCTCCAGGGCTATCAATGGCCGGCCTTCATGCAGGCCCTCGCTGCTAGACCCGGCGGTGCTCCGTTCCTACGAATCACTGGAGTCGGGCCTAGCATCGAGTCTGTTAAGGAGACGGGCCGTTGCCTAACAGAATTGGCCCACTCCCTACGCATCCCCTTCGAGTTCCACTCCGTCGGGGAACAACTGGAGAATCTAAAGCCGCACATGTTCAACCGCCGAGTGGGCGAAGCGCTGGCCGTTAATACCGTTAACCGGCTCCACCGCGTCCCAGGTAACGCCCTTGGAAACTTGCTCTCCATGATAAGGGACCAAGCACCGAGCATAGTGACTCTAGTTGAGCAAGAAGCTAGCCATAACGGGCCTTATTTTCTTGGGAGATTCTTGGAGGCATTGCATTATTATTCGGCGATTTTCGATTCCTTGGACGCCACGTTTCCGCCAGAATCGGCTCAGAGGGCGAAGGTGGAGCAATACATTTTCGCGCCGGAGATAAGGAACATCGTGGCTTGCGAGGGGCCAGATAGGGTGGAGAGGCATGAAAGGCTTGATAAGTGGAGGAAGATCATGGAAGGGAAAGGGTTCAAAGGGGTTCCACTGAGTCCGAACGCGGTGACTCAGTCGAAGATCTTGCTGGGACTGTATTCTTGTGATGGCTATCGGCTTACGGAGGACAAGGGTTGCTTGCTTCTTGGCTGGCAGGATAGGGCCATAATTGCTGCATCTGCTTGGCGCTGCTAA 2106 0.5081 MINSLCGSSVSLKSENSSTKLQPTSSNDSVLQSNKKSNNATQSSADLLEQNNDNNNNTLTPPSLNLPALKFDLDGGGDVEVQSPDSSMWESFFSDQLDADFMMCSPVRNVPSPQQQQPQASTYNCNYNYAHSMQAQSFSGCSPPRFSPQIGAYNSGGGSKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEELLEEFQQGEYSSSITAANNSSKVGDGSDIVGTSSECFDLGNSIPSILGNLIPSGSEESSVQDNNELHHHMGSMVSASLSQALQQERYHEKQQKQQAQQLQQQQQHQQHQNLMVPIPIGLEQEQDSGLQLVHLLLACAEAVAKDEYMLARRYLQHLNRVVTPLGDSMQRVASCFTESLSARLATTLTTKSSTSSSNGKPIPSSSSSSSSSSLSTFPHSNPMEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEGEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPSIESVKETGRCLTELAHSLRIPFEFHSVGEQLENLKPHMFNRRVGEALAVNTVNRLHRVPGNALGNLLSMIRDQAPSIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRAKVEQYIFAPEIRNIVACEGPDRVERHERLDKWRKIMEGKGFKGVPLSPNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWRC 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc614g00003 701 MobiDBLite consensus disorder prediction 274 299 - -
Stsc614g00003 701 MobiDBLite consensus disorder prediction 1 43 - -
Stsc614g00003 701 MobiDBLite consensus disorder prediction 377 405 - -
Stsc614g00003 701 ProSiteProfiles GRAS family profile. 312 700 IPR005202 -
Stsc614g00003 701 Pfam GRAS domain family 321 700 IPR005202 -
Stsc614g00003 701 Coils Coil 274 301 - -
Stsc614g00003 701 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 276 695 IPR005202 -
Stsc614g00003 701 MobiDBLite consensus disorder prediction 285 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc614g00003 Stsc-Chr614 15381 19686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc614g00003 315 701 GRAS Transcription Factor Family AT1G66350 44.784 3.29e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc614g00003 GRAS 1e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc614g00003 - - gmx:100775374 940.643