Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61497g00001 ATGACAACCACTTCCCTTCTCTTCCTCTTTCTCTTCTCTCTCCTCTCCCCTTCCCTCATTTCCTCTTCTCCCCTCCAAGACCCTGAATTGGTAGCTCAACAAGTACACAGGCAAATCAATGCGTCTGTGGCCAGGAGGAACTTGGGTTACCTGTCTTGCGGGACAGGTAACCCAATTGACGACTGTTGGAGGTGTGACCCGAACTGGGAGAAGAACAGGCAGAGGCTTGCCGACTGCGCTATTGGTTTCGGCAAGAACGCCATTGGCGGAAGGGACGGAAAAATCTACGTGGTAACTGATTCCGGTAACGATGACCCAGTAAACCCGAAACCCGGAACACTCCGTTACGCAGTGATTCGGGACGAGCCGTTATGGATCATATTCGCTAGGGACATGGTGATTCAGCTGAAAGAAGAGCTGATAATGAACTCGTTCAAGACCATTGATGGAAGAGGAGCTAGCGTGCACATTGCTAATGGACCATGCATTACGATTCAGTATGTGACAAATGTTATAATACATGGTATTCACATACATGATTGTAAGCAAGGTGGGAATGCTATGGTGCGTGACTCCCCACGGCACTTCGGGTGGAGGACACTATCGGACGGTGATGGGGTGTCCATATTTGGCGGGAGCCACGTGTGGGTTGATCATTGCTCCTTGTCTAACTGTAGAGACGGTTTGATTGATGCAATTCATGGGTCCAACGCTATTACCATTTCTAACAATTACATGACCCACCATGATAAGGTTATGTTGTTGGGTCATAGTGATACATATACACAAGACAAGAACATGCAGGTTACTATTGCCTTTAACCACTTCGGAGAAGGCCTTGTTCAGAGAATGCCAAGGTGTAGGCATGGGTATTTCCATGTGGTGAACAATGACTATACACACTGGGAAATGTATGCTATTGGAGGAAGTGCCAACCCAACCATCAATAGCCAAGGCAACAGATTTGTAGCACCAAATGACAGGTTCAGCAAGGAGGTGACAAAGCATGAGGATGCACCGGCGAATGAATGGAAGGGTTGGAATTGGAGGTCAGAAGGGGACTTAATGGTAAATGGTGCATTTTTCACACAATCTGGTGCTGGAGCCTCTTCAAGTTATGCAAGGGCTTCTAGTTTGAGTGCAAGGCCATCTACTCTTGTGGGCACTATAACAACCGGTGCAGGTGCACTCGCTTGTAGGAAGGGTTCTCGTTGCTGA 1218 0.4795 MTTTSLLFLFLFSLLSPSLISSSPLQDPELVAQQVHRQINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGNDDPVNPKPGTLRYAVIRDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIANGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHFGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSNAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPANEWKGWNWRSEGDLMVNGAFFTQSGAGASSSYARASSLSARPSTLVGTITTGAGALACRKGSRC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61497g00001 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Stsc61497g00001 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Stsc61497g00001 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Stsc61497g00001 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Stsc61497g00001 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Stsc61497g00001 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Stsc61497g00001 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Stsc61497g00001 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Stsc61497g00001 405 PANTHER PECTATE LYASE 18-RELATED 26 403 IPR045032 GO:0030570
Stsc61497g00001 405 Pfam Pectate lyase 138 322 IPR002022 -
Stsc61497g00001 405 Gene3D - 56 398 IPR012334 -
Stsc61497g00001 405 SMART amb_all 131 328 IPR002022 -
Stsc61497g00001 405 SUPERFAMILY Pectin lyase-like 37 399 IPR011050 -
Stsc61497g00001 405 FunFam Pectate lyase 56 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61497g00001 Stsc-Chr61497 15675 17609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61497g00001 5 405 Polysaccharide Lyase AT5G63180 80.149 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61497g00001 K01728 - gmx:100101868 757.288