Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61489g00002 ATGGATTTTCCAATGGTCATTTACCTTTTTCTTTTCATGATCATGGTATACACAATAGTGATGAAAAAGCCTACTACCAAATCTCTGAAGTTACCACCAGGGCCATACAAGCTTCCCATAATTGGGAACATACACAACCTCTTTGGTTCATCATTACCCCACCATACATTGAGAGATTTATCAACAAAATATGGACCCTTGATGCATCTCAAGCTAGGTGAAGTTTCTGCTATAGTGGTATCTTCACCTGAATATGCTAAGGAGTTCTTGAAAACCCATGACCTGAATTTCTCATCAAGACCCCCAATTCTAGCTTCAAAGATAATGTCCTATGGTTCTAAGGGCTTGTCTTTTTCACCATATGGTGATTATTATAGACATTTGAGGAAGATTTGTGTGTTGGAGCTTCTGAGCTCTAAACGTGTCCAATCTTTACAACCAATCAGAGTTGAAGAGCTCAACAATCTCATCAAATTGATTCATGCTTCATCAAAAGAAGGATCACCTATCAATCTTTCCAAGGAAGTGTTGTCAACAATATCTAATATTGCTTCAAGGTCTGCATTTGGCACCAAGTGCAGGTTCCACCAGGAATTCATATCAGTTGTTAAAGAAGCTACATTGATTTCAGGAGGTTTTGAGATTGGAGATTTGTACCCTTCTATTACATGGCTTCAATATGTCTCTGGGCTGAAGCCAAAGCTTGAGAAACTGCACCGAGAAGCTGATCACATAATGCAAAACATTTTCAATGACCACAGAGAGATGAAATCATCAGGGACAACACGAGAACATAGCGATGATGAAGAAGCAAATGAGTACCTCTTAGATGTGCTCTTCAAATTCCAGGGTAGTAGTCATCAGCAAGAGTTTCAATTAACAGATGAAAGTATCAAGGCTGTGATATTGGACATTTTTGCAGCAGGATCTGAGACATCAGCTACAGCTGTATTGTGGGCAATGGCAGAGATGATTAAGAATCCATTGATAATGAAGAAGGCACAAGATGAAGTAAGAGGGTTACTTGACAAAGAAGGAACAAGTGGCATGGAAAAACTAAAATTCTTGAAATCAATTGTGAAAGAGACACTGAGATTGCACCCACCTGGTGCATTTCTTCTTCCAAGAGAATGTGGACAAGCTTGTGACATCAATGGATATCATATACCTTCAAAAAGCAAAGTAATAATCAATGCTTGGGCAATTGGGAGAGACCCAAATCATTGGATTGAGCCTGAAAGGTTCAATCCTGAAAGGTTCATGAATAGCTCTGTTGATTACAGAGGAAACAACTTCCAGTTCATTCCGTTTGGTGCCGGAAGAAGAATGTGCCCGGGAATCACATTTGGGGTGTCTAGCACTGAGTCTACACTTGCAATGTTGTTGTACCATTTTGATTGGAAGCTTCCCAATGGAATGGAAATACAAGGCTTGGATATGTCTGAAACTTTTGGAGTTGCAGTGATGAGAAAAGAAAATCTTTACCTTGTTCCCATTACTTCTCGTCCTATATACAACTGA 1521 0.3945 MDFPMVIYLFLFMIMVYTIVMKKPTTKSLKLPPGPYKLPIIGNIHNLFGSSLPHHTLRDLSTKYGPLMHLKLGEVSAIVVSSPEYAKEFLKTHDLNFSSRPPILASKIMSYGSKGLSFSPYGDYYRHLRKICVLELLSSKRVQSLQPIRVEELNNLIKLIHASSKEGSPINLSKEVLSTISNIASRSAFGTKCRFHQEFISVVKEATLISGGFEIGDLYPSITWLQYVSGLKPKLEKLHREADHIMQNIFNDHREMKSSGTTREHSDDEEANEYLLDVLFKFQGSSHQQEFQLTDESIKAVILDIFAAGSETSATAVLWAMAEMIKNPLIMKKAQDEVRGLLDKEGTSGMEKLKFLKSIVKETLRLHPPGAFLLPRECGQACDINGYHIPSKSKVIINAWAIGRDPNHWIEPERFNPERFMNSSVDYRGNNFQFIPFGAGRRMCPGITFGVSSTESTLAMLLYHFDWKLPNGMEIQGLDMSETFGVAVMRKENLYLVPITSRPIYN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61489g00002 506 Pfam Cytochrome P450 32 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 PANTHER CYTOCHROME P450 71B11-RELATED 15 499 - -
Stsc61489g00002 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506|GO:0016705
Stsc61489g00002 506 SUPERFAMILY Cytochrome P450 32 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 CDD CYP71-like 63 494 - -
Stsc61489g00002 506 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 Gene3D Cytochrome P450 25 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 FunFam Cytochrome P450 99A2 21 499 - -
Stsc61489g00002 506 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 PRINTS E-class P450 group I signature 398 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc61489g00002 506 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61489g00002 Stsc-Chr61489 6273 9183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61489g00002 6 500 Cytochrome P450 AT1G13110 40.668 8.32e-135 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61489g00002 - K13267 gmx:100813216 659.833