Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61484g00008 ATGGCCTTGAAAACTTCCAAGAACGAAGAAGAACAATCGGAGACAAGTAATTCACAGGATAAGACCCTCAAAAAGCCAGACAAAATTCTGCCGTGCCCCCGTTGTAATAGCATGGACACCAAGTTTTGTTACTACAACAACTATAACGTCAACCAACCCCGCCACTTCTGCAAGAATTGTCAGAGATACTGGACTGCTGGCGGAACCATGAGGAACGTGCCTGTAGGTGCCGGTCGCAGGAAGAACAAGAACTCTGCTTCTCACTATCGACAGATAACTGTCCCTGAAGCAGCAATGCTGCAAAATAACATGAAAGACTTGCCAAATGGAGTCCATCATCCTCCTTTGATGTGCAACGGCACAGTCCTTACATTTGGGTCTGATGCACCCTTGTGCGAGTCAATGGCATCTGTTTTGGACCTTTCTGAAAAAGCTGCACAAGATTACATGAGGAATGGATTTGCTAAGCCTGAAGAGCTAAGAATTCGGGTTCCCGGCGCGAGTGGAGAGAAAGGGGACAATCAATCCAATAAATCTTCAGTTAACTCTGCAAAACCAATGGGAGGTATAACCAACAGTGGCTCCCAAGAAAAATCTATGCAGAATGGTCACAGCTTCACACAACAAATTCCTTACTTTCCCGGGCCCCCTTGGCCTCTCCCTTGGAATCCGGTGCAGTGGAACTCTTCGGTGCCACCACCTGCTTTTTGCGCACCAGGATTTGCCATGCCTTTCTATCCCGCAACAGCTTATTGGGGTGTCTCAGGTGCATGGAACATGCCATGGCTAGCACAACCATCATCACCTAAAGCTGCAGCCACAAACTCTGGGCCTAACTCCCCAACCTTGGGCAAACATTCAAGAGAAGAAAACATGTTTAAATCAAATGAGCCGGGTGGTGTGAATGAAGACAAACAAAGCAAAGAGAATCATAAAGAAAAGTGTCTTTGGGTTCCAAAAACACTAAGAATTGATGATCCGGAAGAAGCAGCAAAAAGTTCTATATGGACTACGCTCGGAATCAGACATGATAAGGATGACTCAGTTCTTGGGGAAGGACTCTTCAAACCATTCCCTTCGAAGTACCACGAAAAGAGTCATCCGATGCATGCCTCACCCGTATTGCAGGCCAATCCAGCAGCATTGTCTAGGTCACTAAACTTTCATGAGACTTCATAA 1179 0.4631 MALKTSKNEEEQSETSNSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRQITVPEAAMLQNNMKDLPNGVHHPPLMCNGTVLTFGSDAPLCESMASVLDLSEKAAQDYMRNGFAKPEELRIRVPGASGEKGDNQSNKSSVNSAKPMGGITNSGSQEKSMQNGHSFTQQIPYFPGPPWPLPWNPVQWNSSVPPPAFCAPGFAMPFYPATAYWGVSGAWNMPWLAQPSSPKAAATNSGPNSPTLGKHSREENMFKSNEPGGVNEDKQSKENHKEKCLWVPKTLRIDDPEEAAKSSIWTTLGIRHDKDDSVLGEGLFKPFPSKYHEKSHPMHASPVLQANPAALSRSLNFHETS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61484g00008 392 PANTHER CYCLIC DOF FACTOR 2 7 392 IPR045174 GO:0003700|GO:0006355
Stsc61484g00008 392 MobiDBLite consensus disorder prediction 1 26 - -
Stsc61484g00008 392 MobiDBLite consensus disorder prediction 266 313 - -
Stsc61484g00008 392 MobiDBLite consensus disorder prediction 165 208 - -
Stsc61484g00008 392 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Stsc61484g00008 392 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Stsc61484g00008 392 MobiDBLite consensus disorder prediction 268 286 - -
Stsc61484g00008 392 MobiDBLite consensus disorder prediction 170 208 - -
Stsc61484g00008 392 Pfam Dof domain, zinc finger 27 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61484g00008 Stsc-Chr61484 17454 19380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61484g00008 4 392 C2C2-Dof Transcription Factor Family AT5G39660 50.246 6.13e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc61484g00008 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61484g00008 - - gmx:100788247 598.586