Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61465g00001 ATGAACGCGCTTCCCGACCACCCGAACGTGGTGAAGCTGAGGGCGACTTACGAGGACGACGAGAACGTTCACCTCGTGATGGAGCTTTGTGCTGGCGGCGAGCTTTTTGACCGGATCGTGGCGAGAGGACACTACAGCGAGCGCGCGGCGGCGCACGTGGCAAGGACCATTGCGGAGGTGGTGAGGATGTGCCACGTCAATGGCGTCATGCATCGGGACCTGAAGCCGGAGAATTTCTTGTTTGCGAATAAGAAGGAGAATTCCGTTCTTAAGGCCATTGACTTTGGACTCTCCGTGTTCTTCAAGCCTGGAGAGAGGTTTACAGAGATTGTTGGGAGTCCGTACTATATGGCGCCGGAGGTATTGAAGAGGAACTATGGACCAGAGGTGGATGTGTGGAGTGCTGGTGTCATTCTTTATATTTTGTTGTGTGGAGTTCCTCCTTTTTGGGCAGAGACGGAGCAAGGGGTTGCATTAGCAATATTGAGGGGGGTGATTGACTTCAAGAGGGAGCCATGGCCGCAGATATCAGATAGTGCTAAGAGCCTTGTGAGGCAGATGTTGGAACCTGATCCTAAGAAGAGGTTGACGGCGGAGCAGGTTCTTGAACATTCTTGGCTACAGAATGCAAAGAAAGCTTCGAATGTTCCGTTGGGAGATATCGTGAGGACAAGGCTTAAGCAGTTCTCTGTGATGAATAGATTCAAAAAGAGAGCTCTTCGGGTGATTGCAGAACATTTATCTGTTGAAGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAGAGATGGCAAAGTAACATATGAGGAACTTAAGGCTGGGTTGAAGAGGGTTGGTTCGCAATTGGCTGAGCCAGAGATAAGGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTGGACTATGGAGAGTTTGTAGCTGTGACGATTCACTTGCAAAGAATGGAGAATGATGAGCATATCCGCAAAGCATTCACATTTTTTGACAAAGATGAGAGTGGCTATATTGAGTTAGATGAACTAGAGCAAGCATTGCTGGATGAGACAGGAGAAACTGATAAGGATGTATTAAATGACATCATGAGAGAAGTTGACACTGACAAGGATGGTCGAATCAGTTATGACGAATTTGTAGCCATGATGAAGACAGGAACTGATTGGAGAAAAGCATCAAGGCAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAACTTGATGAAGGATGGTTCGCTTCAGCTTCATGACGGGGTTAGTGGTCAAGCTATTGTGGTTTGA 1296 0.4699 MNALPDHPNVVKLRATYEDDENVHLVMELCAGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHVNGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFTEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHSWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDRDGKVTYEELKAGLKRVGSQLAEPEIRMLMEVADVDGNGVLDYGEFVAVTIHLQRMENDEHIRKAFTFFDKDESGYIELDELEQALLDETGETDKDVLNDIMREVDTDKDGRISYDEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGVSGQAIVV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61465g00001 431 ProSitePatterns EF-hand calcium-binding domain. 371 383 IPR018247 -
Stsc61465g00001 431 Pfam EF-hand domain pair 325 388 IPR002048 GO:0005509
Stsc61465g00001 431 Pfam EF-hand domain pair 255 314 IPR002048 GO:0005509
Stsc61465g00001 431 ProSitePatterns EF-hand calcium-binding domain. 263 275 IPR018247 -
Stsc61465g00001 431 ProSiteProfiles EF-hand calcium-binding domain profile. 286 321 IPR002048 GO:0005509
Stsc61465g00001 431 Pfam Protein kinase domain 6 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61465g00001 431 CDD EFh 326 388 IPR002048 GO:0005509
Stsc61465g00001 431 SUPERFAMILY Protein kinase-like (PK-like) 4 235 IPR011009 -
Stsc61465g00001 431 SMART serkin_6 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61465g00001 431 ProSitePatterns EF-hand calcium-binding domain. 299 311 IPR018247 -
Stsc61465g00001 431 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Stsc61465g00001 431 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61465g00001 431 FunFam Calcium-dependent protein kinase 7 216 391 - -
Stsc61465g00001 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Stsc61465g00001 431 Gene3D Transferase(Phosphotransferase) domain 1 35 216 - -
Stsc61465g00001 431 SUPERFAMILY EF-hand 235 414 IPR011992 -
Stsc61465g00001 431 Gene3D - 217 391 - -
Stsc61465g00001 431 ProSiteProfiles EF-hand calcium-binding domain profile. 322 357 IPR002048 GO:0005509
Stsc61465g00001 431 CDD STKc_CAMK 6 206 - -
Stsc61465g00001 431 FunFam calcium-dependent protein kinase 13 35 215 - -
Stsc61465g00001 431 ProSitePatterns EF-hand calcium-binding domain. 335 347 IPR018247 -
Stsc61465g00001 431 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Stsc61465g00001 431 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 383 - -
Stsc61465g00001 431 SMART efh_1 326 354 IPR002048 GO:0005509
Stsc61465g00001 431 SMART efh_1 362 390 IPR002048 GO:0005509
Stsc61465g00001 431 SMART efh_1 254 282 IPR002048 GO:0005509
Stsc61465g00001 431 SMART efh_1 290 318 IPR002048 GO:0005509
Stsc61465g00001 431 ProSiteProfiles EF-hand calcium-binding domain profile. 250 285 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61465g00001 Stsc-Chr61465 8533 11663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61465g00001 1 431 EF-hand Containing Proteins AT1G74740 83.063 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc61465g00001 Pkinase 4.6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61465g00001 K13412 - gmx:100800559 796.964