Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61437g00003 ATGGACCCTCCGGAAGAAACCGCCACTACCACCGTCGATCAAGAAGGAGCTTCCACCGGGACAGATGCCGCTGCGGACACTCCAAGCGGCGACGAGCTAGGCGAACCCGGTGGAAGCGGCGGAGCCGCTGGTGGAAGTAACAGGGACAGGGTGAAGGGACCTTGGTCGCCAGAAGAGGATGCGATTTTGAGCCGTTTGGTGAGCAAATTTGGCGCCAGGAATTGGAGCCTCATCGCCCGCGGGATTAACGGCAGATCCGGCAAGTCCTGCCGCCTTAGGTGGTGCAACCAGCTCGACCCTGCCGTTAAGCGCAAGCCCTTTACTGATGAGGAGGACCGTATCATAGTTGCTGCTCATGCAATCCATGGGAATAAATGGGCAGCCATAGCCAGACTTCTTCCCGGGAGAACAGATAATGCCATTAAAAACCACTGGAATTCCACTTTGAGGCGTCGAGGAGTTGAACATGATAAGACTAAGGTAGAATCCAGTAACATGGTGGAAGATGTTAGCCTCGACAAAGGCAAAGCATCCTCCGAAGAAACACTTTCATGCGATGTTAATTCATTCAGATCCTCTGAAGGAAGAGATGTTAGTTCTGCAGAGGCCATGGATGATAAATACGAAGAAAAATCACTGACCGAGGGTCAATTGTACCATGAAGTCAAGGATCCGCCTACCCTTTTTCGGCCAAAGGCACGAATTAGTGCTTTTAGTGTATATCACACTTTTGATGGTTTCCAACCTTCAACATCAATTCAAAGACCGGTTCCAATGCAAGGATCCATCTTACAATCATCAAAACCAGATAGAGAAATTTGCAAGATGCTCGAAGGAATTTACAATGACCAATCAGTGCCTCACCAATGCGGCCACGGTTGTTGTGCTCCAAATAGTAAAAATTTCAAAAGCTCTTTGATGGGTCCAGAATTCATTGAATTCTCTGAACCCCAATCTTTCCCAAGTTTTGAGTTGGCCGCAATAGCTACAGACATCAGCAACCTTGCTTGGCTTAAAAGCGGATTGGAGAATAGTAGTGTCAAAATGATGGGAGAAACAACTAGCAGAGTAGTTTCTAATGGCTCTTAA 1089 0.4793 MDPPEETATTTVDQEGASTGTDAAADTPSGDELGEPGGSGGAAGGSNRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGINGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVEHDKTKVESSNMVEDVSLDKGKASSEETLSCDVNSFRSSEGRDVSSAEAMDDKYEEKSLTEGQLYHEVKDPPTLFRPKARISAFSVYHTFDGFQPSTSIQRPVPMQGSILQSSKPDREICKMLEGIYNDQSVPHQCGHGCCAPNSKNFKSSLMGPEFIEFSEPQSFPSFELAAIATDISNLAWLKSGLENSSVKMMGETTSRVVSNGS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61437g00003 362 SUPERFAMILY Homeodomain-like 49 145 IPR009057 -
Stsc61437g00003 362 CDD SANT 106 149 IPR001005 -
Stsc61437g00003 362 Gene3D - 106 152 - -
Stsc61437g00003 362 ProSiteProfiles Myb-like domain profile. 99 149 IPR001005 -
Stsc61437g00003 362 ProSiteProfiles Myb-like domain profile. 47 98 IPR001005 -
Stsc61437g00003 362 PANTHER MYB PROTEIN-RELATED 52 185 - -
Stsc61437g00003 362 FunFam MYB transcription factor 52 103 - -
Stsc61437g00003 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 153 IPR017930 -
Stsc61437g00003 362 CDD SANT 54 96 IPR001005 -
Stsc61437g00003 362 MobiDBLite consensus disorder prediction 1 56 - -
Stsc61437g00003 362 MobiDBLite consensus disorder prediction 156 175 - -
Stsc61437g00003 362 FunFam Transcription factor MYB44 106 152 - -
Stsc61437g00003 362 SMART sant 103 151 IPR001005 -
Stsc61437g00003 362 SMART sant 51 100 IPR001005 -
Stsc61437g00003 362 Gene3D - 51 103 - -
Stsc61437g00003 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 102 IPR017930 -
Stsc61437g00003 362 Pfam Myb-like DNA-binding domain 55 112 - -
Stsc61437g00003 362 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61437g00003 Stsc-Chr61437 13323 16732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61437g00003 38 362 MYB Transcription Factor Family AT3G09230 52.226 1.86e-108 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc61437g00003 Myb_DNA-bind_6 5.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61437g00003 K09422 - gmx:100811740 537.339