Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61416g00001 ATGCCTAATATTTACAATGCTCTGGTCGTAAGGGGTCGAGACATTGTTGGTCAACAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGCGCTACGGATGGTCTAATGAGAGGAATGGAAGTGATTGATACGGGAGCTCCCCTAAGTTTTCTAGTCGGCGGAGCAACTCTAGGACGAATTTTTAACGTACTTGGCGAACCTATTGATAATTTGGGTCCTGTAGATACTCGCACAACATCTCCTATTCATCGATCCGCGCCTGCCTTTATACAATTAGACACAAAATTATCCATTTTTGAAACCGAAATTAAAGTAGTAGATCTTTTAGCTCCTTATCGCCGTGGAGGAAAAATTGGACTCTTTGGCAGAGCTGGAGTGGGTAAAACAGTACTTATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGTGGTGTATCCGTATTTGGCGGAGTAGGAGAGCGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGGAGAATCAAAAGTAGCTCTAGTGTACGGTCAAATGAATGAATCGCCTGGAGCTCGTATGAGAGTTGGTTTAACTTCCCTAATTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACGTGCTTCTATTTATTGACAATATCTTCCGATTCATCCAAGCGGGATCCGTGGCGTCAGCCTTATTGGGTCGAATGCCTTCCGCTGTAGGTTATCAACCCACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGATCCATAACTTCTATTCAAGCAGTTTATGTACCCGCAGACGATTTGACCGACCCTGCCCCTGCTACGACATTTGCCCATTTGGATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCCACTTCAACCGATATGCCCTTCGGCACGACCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATGGGCCACATTAAAATTACCTTCTGGGGAGGCAGTTGAACCCGCTTGGATCACATCTAGACAAATAAAAGCAGGTCGGCGGGCAATGTCACGAAATGTCCGCCGAGGTGGACAAATATGGGTACGGATATTTCCAGACAAACCTGTTACACTAAGACCAACCGAAATGCCCGATAACAGCGGAGCCTGCCAATTGATGTGTATTCGAATCATAGGAGCTGGTAATCGACGATATGCTTCTATTGGTGACATTGTTGTTGCTATAATCAAGGAAGCGGTGCCAAATATGTCTTTAAAAAGATCAGAAGTGATTAGAGCTGTAAACGTACGTACTCGTAAAGAACTTAAACGCAACAATGGCATGATAATACAGTATGATGATAATGCCGCAGTTGTCATTGATCAAGAGGGAAATCCAAAAGGAACTCGAATCTTTGGCGTAATTGCCCGGGAATTGAGACAGTTAAATTTTACTAAAATAGTCTCATTAGCACCTGAGGTATTATAA 1611 0.4196 MPNIYNALVVRGRDIVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSFLVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETEIKVVDLLAPYRRGGKIGLFGRAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIGESKVALVYGQMNESPGARMRVGLTSLIMAEYFRDVNEQDVLLFIDNIFRFIQAGSVASALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDALEEACTVWEGVLIDQKEESTSTDMPFGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKWATLKLPSGEAVEPAWITSRQIKAGRRAMSRNVRRGGQIWVRIFPDKPVTLRPTEMPDNSGACQLMCIRIIGAGNRRYASIGDIVVAIIKEAVPNMSLKRSEVIRAVNVRTRKELKRNNGMIIQYDDNAAVVIDQEGNPKGTRIFGVIARELRQLNFTKIVSLAPEVL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61416g00001 536 PANTHER ATP SYNTHASE 1 309 - -
Stsc61416g00001 536 CDD Ribosomal_L16_L10e 379 424 IPR016180 GO:0003735|GO:0005840|GO:0006412
Stsc61416g00001 536 Pfam Ribosomal Proteins L2, C-terminal domain 332 379 IPR022669 GO:0003735|GO:0005840|GO:0006412
Stsc61416g00001 536 ProSitePatterns Ribosomal protein L16 signature 1. 402 413 IPR020798 GO:0003735|GO:0005840|GO:0006412
Stsc61416g00001 536 SMART AAA_5 125 310 IPR003593 GO:0016887
Stsc61416g00001 536 PRINTS Ribosomal protein L16 signature 401 430 IPR000114 GO:0003735|GO:0006412|GO:0019843
Stsc61416g00001 536 PRINTS Ribosomal protein L16 signature 385 396 IPR000114 GO:0003735|GO:0006412|GO:0019843
Stsc61416g00001 536 SMART Ribosomal_L14_2 426 536 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc61416g00001 536 Gene3D - 59 311 IPR027417 -
Stsc61416g00001 536 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 114 309 IPR000194 GO:0005524
Stsc61416g00001 536 Hamap 50S ribosomal protein L14 [rplN]. 406 536 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc61416g00001 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 309 IPR027417 -
Stsc61416g00001 536 SUPERFAMILY Ribosomal protein L14 425 536 IPR036853 GO:0003735|GO:0005840|GO:0006412
Stsc61416g00001 536 NCBIfam F0F1 ATP synthase subunit beta 1 310 IPR005722 GO:0015986|GO:0045261|GO:0046933
Stsc61416g00001 536 Gene3D Ribosomal protein L14 422 536 IPR036853 GO:0003735|GO:0005840|GO:0006412
Stsc61416g00001 536 CDD F1-ATPase_beta_CD 63 309 - -
Stsc61416g00001 536 Pfam Ribosomal protein L14p/L23e 425 536 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc61416g00001 536 SMART Ribosomal_L2_C_2 332 425 IPR022669 GO:0003735|GO:0005840|GO:0006412
Stsc61416g00001 536 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 1 58 IPR036121 GO:0046034|GO:1902600
Stsc61416g00001 536 Pfam Ribosomal protein L16p/L10e 379 423 IPR016180 GO:0003735|GO:0005840|GO:0006412
Stsc61416g00001 536 NCBIfam 50S ribosomal protein L14 424 536 IPR005745 GO:0003735|GO:0006412|GO:0015934
Stsc61416g00001 536 Pfam ATP synthase alpha/beta family, beta-barrel domain 1 56 IPR004100 GO:0046034|GO:1902600
Stsc61416g00001 536 Gene3D - 321 381 IPR014722 -
Stsc61416g00001 536 FunFam Ribosomal protein L14 467 536 - -
Stsc61416g00001 536 Gene3D - 1 58 - -
Stsc61416g00001 536 SUPERFAMILY Translation proteins SH3-like domain 332 398 IPR008991 -
Stsc61416g00001 536 CDD ATP-synt_F1_beta_N 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61416g00001 Stsc-Chr61416 7562 12675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61416g00001 426 532 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.036 5.52e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61416g00001 K02112 - mnt:24286633 576.244