Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61408g00002 ATGTGGCCTTCCAGGTCCTCCCTCAACTACGGCCTCGCACCTCCCGATATTCCTCCTCACGGAATGGTCGGACTCCGAGATGTCTTCGTCGTCGCTCCAGCATCCTCCTTCCACCACCACCACCACCACAACGACGCCGCCGTTTTGTCCTCTTCCGATCTCCACCATCTCGGAAGCAACAATTCCTCCAACAATCCCGCAACTGCACTTGGCGTCGGAGTCGGCGTCGGTGTTATCCCTCTTCTCACCGCAACGCCGTGTCTCGATCAGGAGAATATCCTCACCGGAAGATCAAGAACCGCCGCATCGGGAAGCAGCGGCAGCGGAATTCAATTCTGGCAGGAACAACAACCTCATCATCATCAATACCTGAAGAAGCAGGGTCTTATAGACCACAATATCGGAGCCAATTTAATCCCCGGTGGCGGTAGCGGCGGCAGCGGAAGCGGCGACGGCGGTGGATCCAACAGCGGAGGCGGAACAACCACGTGTCAAGATTGTGGGAACCAAGCGAAGAAGGATTGTGCGCATAGAAGGTGCAGAACTTGCTGCAAGAGTAGGGGTTTCGATTGCCCTACTCACGTGAAGAGCACGTGGGTCCCAGCTGCTCGCCGGAGGGAGCGCCAGCTCATCACAGGCACGACGGCCACGACGACGGCTGCTGCCGTTGCCGGTTCCAGCGGTTCAACTTCAGGCGCCAAGAAACCTAGGCTGATTTCTTCCCAAACAACAACAAATTCTCACACTTCAACTTCCAACACCACTCCCCCAAGAAGCTTCGACACTTCCTCAAGCCATCAAGATGTGGGTTTCAAGGAGAAATTGCCGGGTCAAATAAGAGCACCTGCAGTGTTCAAGTGTGTGAGAGTGACGTCAGTGGACGATGAACAAGATGAGTATGCATATCAAGCCGTTGTGAAGATCGGTGGTCGTGTCTTCAAAGGCTTTCTCTATGATCAAGGCCATCAGAATCATAGTAATAGAGATAACAACAATAATAACAACAATAATAATAATGTGTATCCTAATCTTTCTGAGCTCCATTTAGGTGGTGGTGGCGGCGGCAGCGGCGGTGGTAGAAATGGGGTTTCATCATCCTCACCAATGCTTGATCCTTCTGATGTTTATGCAGCTTCAGGTGGTGGTGGTGGTGGTATTGGGGGGTTACTGGGAGGTTCAACCTATGGTAATCCAATAAATTGA 1203 0.5254 MWPSRSSLNYGLAPPDIPPHGMVGLRDVFVVAPASSFHHHHHHNDAAVLSSSDLHHLGSNNSSNNPATALGVGVGVGVIPLLTATPCLDQENILTGRSRTAASGSSGSGIQFWQEQQPHHHQYLKKQGLIDHNIGANLIPGGGSGGSGSGDGGGSNSGGGTTTCQDCGNQAKKDCAHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLITGTTATTTAAAVAGSSGSTSGAKKPRLISSQTTTNSHTSTSNTTPPRSFDTSSSHQDVGFKEKLPGQIRAPAVFKCVRVTSVDDEQDEYAYQAVVKIGGRVFKGFLYDQGHQNHSNRDNNNNNNNNNNVYPNLSELHLGGGGGGSGGGRNGVSSSSPMLDPSDVYAASGGGGGGIGGLLGGSTYGNPIN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61408g00002 400 Pfam Domain of unknown function (DUF702) 161 323 - -
Stsc61408g00002 400 NCBIfam putative zinc finger domain, LRP1 type 163 205 IPR006510 -
Stsc61408g00002 400 MobiDBLite consensus disorder prediction 320 344 - -
Stsc61408g00002 400 MobiDBLite consensus disorder prediction 320 376 - -
Stsc61408g00002 400 NCBIfam LRP1 C-terminal domain 275 321 IPR006511 -
Stsc61408g00002 400 MobiDBLite consensus disorder prediction 210 266 - -
Stsc61408g00002 400 MobiDBLite consensus disorder prediction 210 269 - -
Stsc61408g00002 400 MobiDBLite consensus disorder prediction 136 159 - -
Stsc61408g00002 400 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 35 378 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61408g00002 Stsc-Chr61408 9104 10971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61408g00002 2 375 C2H2 Transcription Factor Family AT5G12330 48.454 7.73e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc61408g00002 DUF702 4.6e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61408g00002 - - qsu:111988887 406.757