Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc61386g00001 | ATGGCTGTTGCTGAGGATGCCAGTGCGAAATTCGGTGGTTCGAGTGAAGATTTGGAGAGAAGTGTAGTGTCATCTGACTCAAATGCTCCAAACGAAGAAGTGGAGAAACTGAAACCCCGAAATGGTTCTGTTGGAAATGGTGTAGAGGCCGATCAGAATCTCAACGGTGTTGATGGGGTTCCAACCACTGTCTCAGTCCCTAATGGCAATCACAAGCCCCAAATTGGTGGTCAGATGCAAACTGGTTTGGAATCAGGCGGTGGTGAGTTTAAGGTGGGCCATCAGATGGGTAATGGAGTGAGGAATGGAGGGGAGGATGGCAGTGAGAGCTTCGAACTCCAAATGAGGAATTTGGCCGAGCTCTTGTCCAAGTTGAACCCCATGGCTCAGGAGTTTGTGCCCTCTTCACTTGCAAAGAATCATGGGTATTTACCCGGTGCTGGTGGGTTCGGTTTTCCTAACAATTTGCTACTTCCGCCAAATTTTGGCAGTGCTGGTCAACCTAATAGAAGGAGAAAGAATGGCTACAACAATCAGGGGAAGCAAAGAGCAAATCATAAAATAGAAATGGAGAGAAGGGAAGAGATGATTAGGAGGACTGTTTATGTCTCTGATATCGATCAGCAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTGTGTGGGGATCCAAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACGGATGAAGATGGTGCAAGAGCTGCTCTGAACTTGTCTGGCACCATGCTTGGATATTACCCGGTGAGAGTGCTTCCATCTAAAACTGCCATTGCACCAGTTAATCCAACATATTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAATATCGACAAAAAGGTTACTCAAGCTGACGTTAAACTCTTCTTCGAATCGCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCCTTTGTCGAGTTCACAATAGCTGAAAGTGCAATCGCTGCTCTGAGCTGTAGTGGTGTGATTTTGGGTACGCTGCCGATAAGGGTAAGTCCATCGAAGACACCAGTCNNNNNNNNNNTCAATGCATTGACTCATCCATCACTACTCATCTTTCCATGTCTTTTAGCGTTCAGTGCTGCTCGGATATCTTTACATATATACATACAACAGATATTCCTAAGGTATCTATGCCGATTAGTCCGGCATTATGCTATCGTTGTTTCCTGCTTGGGAGTTATGGATATTGTGTTTAGTTTGTAG | 1314 | 0.4498 | MAVAEDASAKFGGSSEDLERSVVSSDSNAPNEEVEKLKPRNGSVGNGVEADQNLNGVDGVPTTVSVPNGNHKPQIGGQMQTGLESGGGEFKVGHQMGNGVRNGGEDGSESFELQMRNLAELLSKLNPMAQEFVPSSLAKNHGYLPGAGGFGFPNNLLLPPNFGSAGQPNRRRKNGYNNQGKQRANHKIEMERREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTIAESAIAALSCSGVILGTLPIRVSPSKTPVXXXXNALTHPSLLIFPCLLAFSAARISLHIYIQQIFLRYLCRLVRHYAIVVSCLGVMDIVFSL | 437 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc61386g00001 | 437 | FunFam | Polyadenylate-binding protein-interacting protein 11 | 163 | 276 | - | - | |
Stsc61386g00001 | 437 | Pfam | Ataxin-2 C-terminal region | 122 | 136 | IPR009818 | - | |
Stsc61386g00001 | 437 | CDD | RRM2_CID8_like | 292 | 373 | IPR034825 | - | |
Stsc61386g00001 | 437 | MobiDBLite | consensus disorder prediction | 1 | 108 | - | - | |
Stsc61386g00001 | 437 | MobiDBLite | consensus disorder prediction | 161 | 182 | - | - | |
Stsc61386g00001 | 437 | Gene3D | - | 162 | 276 | IPR012677 | - | |
Stsc61386g00001 | 437 | Gene3D | - | 281 | 376 | IPR012677 | - | |
Stsc61386g00001 | 437 | SUPERFAMILY | RNA-binding domain, RBD | 286 | 375 | IPR035979 | GO:0003676 | |
Stsc61386g00001 | 437 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 296 | 372 | IPR000504 | GO:0003723 | |
Stsc61386g00001 | 437 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 337 | 375 | - | - | |
Stsc61386g00001 | 437 | MobiDBLite | consensus disorder prediction | 167 | 182 | - | - | |
Stsc61386g00001 | 437 | FunFam | Polyadenylate-binding protein-interacting protein 10 | 290 | 368 | - | - | |
Stsc61386g00001 | 437 | SUPERFAMILY | RNA-binding domain, RBD | 186 | 276 | IPR035979 | GO:0003676 | |
Stsc61386g00001 | 437 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 201 | 263 | IPR000504 | GO:0003723 | |
Stsc61386g00001 | 437 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 298 | 361 | IPR000504 | GO:0003723 | |
Stsc61386g00001 | 437 | CDD | RRM1_CID8_like | 197 | 276 | IPR034823 | - | |
Stsc61386g00001 | 437 | SMART | rrm1_1 | 200 | 270 | IPR000504 | GO:0003723 | |
Stsc61386g00001 | 437 | SMART | rrm1_1 | 297 | 368 | IPR000504 | GO:0003723 | |
Stsc61386g00001 | 437 | MobiDBLite | consensus disorder prediction | 46 | 81 | - | - | |
Stsc61386g00001 | 437 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 199 | 274 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc61386g00001 | Stsc-Chr61386 | 2025 | 7233 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc61386g00001 | 198 | 367 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 24.713 | 1.14e-10 | 61.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc61386g00001 | - | - | pcin:129303146 | 535.798 |