Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61386g00001 ATGGCTGTTGCTGAGGATGCCAGTGCGAAATTCGGTGGTTCGAGTGAAGATTTGGAGAGAAGTGTAGTGTCATCTGACTCAAATGCTCCAAACGAAGAAGTGGAGAAACTGAAACCCCGAAATGGTTCTGTTGGAAATGGTGTAGAGGCCGATCAGAATCTCAACGGTGTTGATGGGGTTCCAACCACTGTCTCAGTCCCTAATGGCAATCACAAGCCCCAAATTGGTGGTCAGATGCAAACTGGTTTGGAATCAGGCGGTGGTGAGTTTAAGGTGGGCCATCAGATGGGTAATGGAGTGAGGAATGGAGGGGAGGATGGCAGTGAGAGCTTCGAACTCCAAATGAGGAATTTGGCCGAGCTCTTGTCCAAGTTGAACCCCATGGCTCAGGAGTTTGTGCCCTCTTCACTTGCAAAGAATCATGGGTATTTACCCGGTGCTGGTGGGTTCGGTTTTCCTAACAATTTGCTACTTCCGCCAAATTTTGGCAGTGCTGGTCAACCTAATAGAAGGAGAAAGAATGGCTACAACAATCAGGGGAAGCAAAGAGCAAATCATAAAATAGAAATGGAGAGAAGGGAAGAGATGATTAGGAGGACTGTTTATGTCTCTGATATCGATCAGCAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTGTGTGGGGATCCAAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACGGATGAAGATGGTGCAAGAGCTGCTCTGAACTTGTCTGGCACCATGCTTGGATATTACCCGGTGAGAGTGCTTCCATCTAAAACTGCCATTGCACCAGTTAATCCAACATATTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAATATCGACAAAAAGGTTACTCAAGCTGACGTTAAACTCTTCTTCGAATCGCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCCTTTGTCGAGTTCACAATAGCTGAAAGTGCAATCGCTGCTCTGAGCTGTAGTGGTGTGATTTTGGGTACGCTGCCGATAAGGGTAAGTCCATCGAAGACACCAGTCNNNNNNNNNNTCAATGCATTGACTCATCCATCACTACTCATCTTTCCATGTCTTTTAGCGTTCAGTGCTGCTCGGATATCTTTACATATATACATACAACAGATATTCCTAAGGTATCTATGCCGATTAGTCCGGCATTATGCTATCGTTGTTTCCTGCTTGGGAGTTATGGATATTGTGTTTAGTTTGTAG 1314 0.4498 MAVAEDASAKFGGSSEDLERSVVSSDSNAPNEEVEKLKPRNGSVGNGVEADQNLNGVDGVPTTVSVPNGNHKPQIGGQMQTGLESGGGEFKVGHQMGNGVRNGGEDGSESFELQMRNLAELLSKLNPMAQEFVPSSLAKNHGYLPGAGGFGFPNNLLLPPNFGSAGQPNRRRKNGYNNQGKQRANHKIEMERREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTIAESAIAALSCSGVILGTLPIRVSPSKTPVXXXXNALTHPSLLIFPCLLAFSAARISLHIYIQQIFLRYLCRLVRHYAIVVSCLGVMDIVFSL 437
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc61386g00001 437 FunFam Polyadenylate-binding protein-interacting protein 11 163 276 - -
Stsc61386g00001 437 Pfam Ataxin-2 C-terminal region 122 136 IPR009818 -
Stsc61386g00001 437 CDD RRM2_CID8_like 292 373 IPR034825 -
Stsc61386g00001 437 MobiDBLite consensus disorder prediction 1 108 - -
Stsc61386g00001 437 MobiDBLite consensus disorder prediction 161 182 - -
Stsc61386g00001 437 Gene3D - 162 276 IPR012677 -
Stsc61386g00001 437 Gene3D - 281 376 IPR012677 -
Stsc61386g00001 437 SUPERFAMILY RNA-binding domain, RBD 286 375 IPR035979 GO:0003676
Stsc61386g00001 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 372 IPR000504 GO:0003723
Stsc61386g00001 437 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 337 375 - -
Stsc61386g00001 437 MobiDBLite consensus disorder prediction 167 182 - -
Stsc61386g00001 437 FunFam Polyadenylate-binding protein-interacting protein 10 290 368 - -
Stsc61386g00001 437 SUPERFAMILY RNA-binding domain, RBD 186 276 IPR035979 GO:0003676
Stsc61386g00001 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 263 IPR000504 GO:0003723
Stsc61386g00001 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 361 IPR000504 GO:0003723
Stsc61386g00001 437 CDD RRM1_CID8_like 197 276 IPR034823 -
Stsc61386g00001 437 SMART rrm1_1 200 270 IPR000504 GO:0003723
Stsc61386g00001 437 SMART rrm1_1 297 368 IPR000504 GO:0003723
Stsc61386g00001 437 MobiDBLite consensus disorder prediction 46 81 - -
Stsc61386g00001 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 274 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc61386g00001 Stsc-Chr61386 2025 7233 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61386g00001 198 367 Eukaryotic Initiation Factors Gene Family AT1G34140 24.713 1.14e-10 61.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61386g00001 - - pcin:129303146 535.798