Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61384g00002 ATGATGAAGGAAGATTCATATGCATCAACAGTGATGGAGGAAGAGGATGATGTTCCACTTCCAGGGTTTAGATTCCACCCAACAGATGAAGAGCTTGTGAGTTTTTATCTAAAGAGGAAGCTTGACAAGAAACCAATCAGCATAGAACTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAACGAGTGGAAGTGGAGGAGAGAAGGAAGGTTACTTCTTTTGCAAGAGAGGGAGGAAGTATAGGAACAGCATAAGGCCTAACAGAGTCACTGGTTCCGGCTTCTGGAAAGCAACCGGGATAGACAAGCCGGTCTACTCCCACGGCGGCGAAGGAAGCGACTGCATTGGACTCAAGAAGACGCTCGTCTACTACCGCGGCAGCGCTGGTAAAGGCACCAAGACTGACTGGATGATGCACGAGTTCCGCCTCCCTTCTGTCAACACAGAAAACAACACAAACCTACTTCTCAACACCAAGAATAATAATCATATCAACAATGCTGATTTGGCCCAAGAAGCTGAAATCTGGACATTGTGTAGAATATTCAAGAGGAATGTGTCACAAAGAAAGCACACAGCAGATTTGAGATCACATTTAGTAGCAACTAATAATAAGCACAAAAAAACCCTTCATGTTCAATCCAATAATCATCATCATCATCAACCTCAAGAATCTTACATCAACTTTGGTGCAACCATCATTGGCCATCACCATTATCAAAATGAACAGAAGCCAGTGATTAACTACACAGCATTATGCAACAACAATAACAACGATCAAACCCAAAGGAACAACAACAATCATCATCATCATCATCACTTGAACTATCACCCTTCTTCAGTGGTGGCTACTACTACTACTGTTGCACAGCAACAACAACAAATGATGGCTCCAACTTCTAACATGTGGATTAATCCTTCTGCAATGAACGATTTCTTTGGATTTGATGATAACTGGGATGAGCTTGGATCCGTTGTCAAATTTGCTGTTGATTCTCCTAGCTTGTAA 1023 0.4194 MMKEDSYASTVMEEEDDVPLPGFRFHPTDEELVSFYLKRKLDKKPISIELIKQIDIYKYDPWDLPTSGSGGEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGSDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSVNTENNTNLLLNTKNNNHINNADLAQEAEIWTLCRIFKRNVSQRKHTADLRSHLVATNNKHKKTLHVQSNNHHHHQPQESYINFGATIIGHHHYQNEQKPVINYTALCNNNNNDQTQRNNNNHHHHHHLNYHPSSVVATTTTVAQQQQQMMAPTSNMWINPSAMNDFFGFDDNWDELGSVVKFAVDSPSL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61384g00002 340 ProSiteProfiles NAC domain profile. 19 189 IPR003441 GO:0003677|GO:0006355
Stsc61384g00002 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 273 - -
Stsc61384g00002 340 Pfam No apical meristem (NAM) protein 21 148 IPR003441 GO:0003677|GO:0006355
Stsc61384g00002 340 Gene3D NAC domain 28 193 IPR036093 GO:0003677|GO:0006355
Stsc61384g00002 340 FunFam NAC domain-containing protein 35 28 192 - -
Stsc61384g00002 340 SUPERFAMILY NAC domain 19 189 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61384g00002 Stsc-Chr61384 3998 6382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61384g00002 1 189 NAC Transcription Factor Family AT5G39820 57.812 1.15e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc61384g00002 NAM 1.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61384g00002 - - adu:107459259 535.028