Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61382g00006 ATGAAACCTCTTCGTCTTCATCTTAGTCTTCACTGCACATGTTCCATTCCGATGTTCATCTTGGCGCTTATTGTCATCACGGCATCCAATAACGTTCCAACATCTCTAAGTGCTGAGGTTAACAGTGATTACTTGGCGTGCAAGAATACTCTAAGCTGCGGAGACATCACAGGTCTCACTTACCCTTTCTGGGGTGTTCTTGTTGGAAACAATAATAACAGGCCAAAGAATTGTGGTGAGTTCAACTTGGAAATCAAATGTATTGGAGATAATAATAATAATGGTGTCCCAAAGTTCACAGTGGATTCTGTCACATACAGGATTCTTCATTGGGACATGGATAAACGGAATCTGACAGTTGCTAGGGAGGATTACTTTGAGAGTTTTGATTTGTGTTCAGGAGACCACAGCAACAACACCTTGGATGAAACCATACTTCAATATGATGATAACAATATTCTTAATATCACTCTCTTATATAACTGTTCTCCCGAAACAAATCCTTCGAATCCGTTTAGGCTTGTTCAAAGTTGCAGCAATAATAATAGTGTGTATTACGCTGAACAAGATAATAGGCCACTGCCTTACTATGAAGCTTGCACCACTCTTGTTTTTCCAGTTTCAAAGGCCCTAGCTCCGGTTCTTGATAACATTAGCAATAGTAATAACCCCACGTCAACAATTCAGGGAGCGTTGGAAAATGGTTTTGGCTTGAAATTGTTGCCTCAAATCGATAATCAGTGTAGCGGATGCACTGCTTCAGGCGGCCAGTGTAGCAGCGATGATGATGGACATTTCACCTGTCTCTGTAATGATAGAGTTCATTCCAATTCTTGTTCAGAGTCATCTTCAGAGTGGAACTGGCGCCTTAAGACTGCTATAGGTGCAACAACAGCTGGTGTTGGAATTGTTGTAGTCTTTGCTGTGATCATTTGCAACCGCATGAGATGTTTTAGTTTAGCACAAATGAGGTTAATCTTTAAGAAAGCAGGGGAATCTGATGACCAGAATGTGGAGGATTTCATCACAACTTATGGCTTTCTAGCCCCAAAGAGATATAATTACTCAGAACTGAAGAAAATCACAAATTCATTTTTTGATCAATTAGGCAAAGGAGGATATGGTGTTGTGTACAAAGGAAAGCTATCCGATGGCCGTCTTGTTGCAGTGAAAGTGATAAATGAATCAAAAGGGAGCGGAGAAGAATTCATAAATGAAGTTGCTAGTATCAGTAGAACGTCTCATGTGAACATTGTCTCATTTTTGGGATTTTGTAACGAAAGAAATAAAAGAGCACTTATTTATGAGTTTGTCTTTAATGGCTCATTGGACAAGTTCATCTATGACAGTGGATCATCAACTCTTACTTGCAATTTGGATTGGAACACAGTTTATCAAATTGCAATTGGCATTGCCCGTGGACTAGACTATTTGCATCGAGGATGTGGTACAAGAATTTTACATCTTGATATTAAACCTCAAAATATTCTCTTAGATGAAGACTTCTGTCCCAAAATCTCTGATTTTGGATTAGCCAAGATATGTCAAAAGAAAGAGAGTATTGTGTCCATGTTGGGAACAAGGGGAACTATAGGATATATAGCACCTGAAGTATTTAGTCGCATGTACGGTGGTGTTTCGCATAAGTCTGATGTATATAGTTATGGCATGTTAATTCTTGAAATGGTTGGAGGAAGAAAGAATTACGAAAGTGGAGGATCAAATTCTAGCGAAATGTGCTTTCCAGACTGGATTTACAAAGATCTAGAGCAAGGTAATATACCATCTCATATTCGCTCACTTGCGACAGACGAAGAGAATGATCTGGTAAAGAAAATTACTTTGTCTACCCTTGCAAATTTCACATGCTTCTTCCAGCAACATGGATGA 1890 0.391 MKPLRLHLSLHCTCSIPMFILALIVITASNNVPTSLSAEVNSDYLACKNTLSCGDITGLTYPFWGVLVGNNNNRPKNCGEFNLEIKCIGDNNNNGVPKFTVDSVTYRILHWDMDKRNLTVAREDYFESFDLCSGDHSNNTLDETILQYDDNNILNITLLYNCSPETNPSNPFRLVQSCSNNNSVYYAEQDNRPLPYYEACTTLVFPVSKALAPVLDNISNSNNPTSTIQGALENGFGLKLLPQIDNQCSGCTASGGQCSSDDDGHFTCLCNDRVHSNSCSESSSEWNWRLKTAIGATTAGVGIVVVFAVIICNRMRCFSLAQMRLIFKKAGESDDQNVEDFITTYGFLAPKRYNYSELKKITNSFFDQLGKGGYGVVYKGKLSDGRLVAVKVINESKGSGEEFINEVASISRTSHVNIVSFLGFCNERNKRALIYEFVFNGSLDKFIYDSGSSTLTCNLDWNTVYQIAIGIARGLDYLHRGCGTRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKESIVSMLGTRGTIGYIAPEVFSRMYGGVSHKSDVYSYGMLILEMVGGRKNYESGGSNSSEMCFPDWIYKDLEQGNIPSHIRSLATDEENDLVKKITLSTLANFTCFFQQHG 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61382g00006 629 Gene3D Phosphorylase Kinase; domain 1 336 437 - -
Stsc61382g00006 629 Pfam Wall-associated receptor kinase galacturonan-binding 47 121 IPR025287 GO:0030247
Stsc61382g00006 629 Pfam Wall-associated receptor kinase C-terminal 189 272 IPR032872 -
Stsc61382g00006 629 PANTHER RUST RESISTANCE KINASE LR10-RELATED 334 617 IPR045874 GO:0004672
Stsc61382g00006 629 FunFam PR5-like receptor kinase 438 624 - -
Stsc61382g00006 629 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Stsc61382g00006 629 ProSiteProfiles Protein kinase domain profile. 363 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61382g00006 629 SUPERFAMILY Protein kinase-like (PK-like) 341 589 IPR011009 -
Stsc61382g00006 629 SMART serkin_6 363 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61382g00006 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Stsc61382g00006 629 Pfam Protein kinase domain 367 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61382g00006 629 Gene3D Transferase(Phosphotransferase) domain 1 439 621 - -
Stsc61382g00006 629 FunFam S-receptor-like serine/threonine-protein kinase 332 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61382g00006 Stsc-Chr61382 19886 22320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61382g00006 6 618 Receptor kinase-like Gene Family AT1G66910 40.219 2.06e-133 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc61382g00006 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61382g00006 - - aip:107635702 927.932