LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc61382g00005	ATGGGAGGAGTGGGAGATGTTGCAGCCATAGTTGAAGAGGAAGAAGAACTCTTATGTGTATTTGGATTTGTTGTTTTTACCATAGGTACCTTGCCAGAGTCTTTCAGAGGGTCCAAGATTGCCACTTTGCATCTCAACGACCAGAAGGGTAAGGGCTTTTCGGGTACAATTGATGTCATTTCAAGCATGCTCGATTTGTCTGAAGCTTGGCTTCAGGGAAACTCCTTTGAAGGATATATCCCTGACATGTCTCATTGTACCACCTTGCAAGATTTACAACTTGCGCACAATCGATTAACAGGTGTGGTTCCAGATTCTCTGATAAATTTAAGTATGGGTGATGGGAACCTGCAAAGTGTTTCATTAAACAACAACTTTTTGCAGGGCCGCAAGCCTACATTTGACTTTTATCCTGAAGTGAACGTTACCACAAATGCCTTTTGTCGCCAAGATTCTGAGCCTTGTGACAAGAGAGTTACCATTTTGCTTGAAATTGCTTCTGAATTTGGATATCCTTATTTGTTGGCGCGTTCATGGCCTGGGAATAATCCTTGTAATAATTGGAGCTTCGTTGCATGTAGCGGGGATATGATTACAACCGTGAATTTGACAAGCCTGAATTTGAATGGAACTATCTCACCTGCATTTGCTAACTTAACTCATTTGCAAAACTTGTACCTGAGTGGAAACAATTTAACCGGTTCAATACCCGAAAACTTGACAACTCTTCATCAACTCAAGAATCTCGATGTCTCCAACAACAACTTATCAGGAAAAATTCCCCATTTTTCACGTAGAGTAAACGTGAATACCAAAGGTAATCCTTTGCTTGGAAGAAGAAATCTACCTGCTTGGATTCAAGGCACAATAGCAGCAGGTATTGGAGTTGTAGGTCTTGTTTTCTTGGTTATACTTATTTGTAACCGAAAGAGGTGTCTTAGCTTCTTACAGAGGATTACGTGTAAGAAAACAGGACCATTTGTTGATCATGAATTTGAAGAATTCATGAAAAGTTATGGATCTTCGATGTTAAGGAGATATAACTATTCTGAAGTGAAAAGAATGACAAATTCATTTCATGACAAACTAGGAAAGGGAGGATATGGCATTGTATACAAAGCATGCTTGAGTGATGGTTGTCCTGTGGCAGTGAAGGTATTAACCGAATCCAGCGGAAATGGGGAGGAATTCATAAATGAGGTAGCAAGTATCAGCAAAACTTCTCATGTCAACATTGTCTCACTTTTGGGATTTTGTTATGAGAACCATAAAAGGGCACTCATCTATGAATTTATGCCGAATGGTATTGCACGAGGATTAGAATATTTGCATCGAGGATGTAGTACAAGAATTTTGCATCTTGATATTAAGCCTCAAAATATTCTTTTAGATGAAGATTTTTGTCCGAAAATTGCTGATTTCGGATTGGCAAAAATATGCAAGAAGAAGGAGAGTATTGTATCTATACCAGGTACAAGAGGAACTCCTGGATACATCGCACCAGAAATATTCAGTCGAACTTTCGGTAAAGTTTCTCACAAGTCTGATGTGTACAGTTTTGGCATGTTGATTCTTGAATTGGTGGGAGGCAGAAAGAACTATGACACTGGTGAATCACTTACAAGTGAAATGTATTTTCCAGATTGGATTTACGGGGATCTTGAGGAGCAAAATATGCTTGGACGGGGTTTGGCAACTACAGAAAAAGAGAATGATATGATAAAGAAAATTACTTTGGTGAGTTTATGGTGCATTCAAACAAGTCCATCAGATAGACCATCAATAAATAAAGTAGTGGAGATGTTAGAAGGGCCACTTCCATCGGTGTCGTATCCTCCAAAGCCGGTCTTATATGCTCCTCAAATGTCTGTCTCGCAGTTTTCACGAATCTCCTATAGCATTACAGATGAGGAGGATTCTGAAATTGTTGAGGAGTCTGTTTCCATCAAATAA	1953	0.3927	MGGVGDVAAIVEEEEELLCVFGFVVFTIGTLPESFRGSKIATLHLNDQKGKGFSGTIDVISSMLDLSEAWLQGNSFEGYIPDMSHCTTLQDLQLAHNRLTGVVPDSLINLSMGDGNLQSVSLNNNFLQGRKPTFDFYPEVNVTTNAFCRQDSEPCDKRVTILLEIASEFGYPYLLARSWPGNNPCNNWSFVACSGDMITTVNLTSLNLNGTISPAFANLTHLQNLYLSGNNLTGSIPENLTTLHQLKNLDVSNNNLSGKIPHFSRRVNVNTKGNPLLGRRNLPAWIQGTIAAGIGVVGLVFLVILICNRKRCLSFLQRITCKKTGPFVDHEFEEFMKSYGSSMLRRYNYSEVKRMTNSFHDKLGKGGYGIVYKACLSDGCPVAVKVLTESSGNGEEFINEVASISKTSHVNIVSLLGFCYENHKRALIYEFMPNGIARGLEYLHRGCSTRILHLDIKPQNILLDEDFCPKIADFGLAKICKKKESIVSIPGTRGTPGYIAPEIFSRTFGKVSHKSDVYSFGMLILELVGGRKNYDTGESLTSEMYFPDWIYGDLEEQNMLGRGLATTEKENDMIKKITLVSLWCIQTSPSDRPSINKVVEMLEGPLPSVSYPPKPVLYAPQMSVSQFSRISYSITDEEDSEIVEESVSIK	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc61382g00005	650	SUPERFAMILY	RNI-like	30	275	-	-
	Stsc61382g00005	650	PANTHER	OSJNBA0070M12.3 PROTEIN	29	435	-	-
	Stsc61382g00005	650	FunFam	serine/threonine-protein kinase PBS1-like	328	431	-	-
	Stsc61382g00005	650	SUPERFAMILY	Protein kinase-like (PK-like)	338	602	IPR011009	-
	Stsc61382g00005	650	ProSitePatterns	Protein kinases ATP-binding region signature.	363	385	IPR017441	GO:0005524
	Stsc61382g00005	650	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	451	463	IPR008271	GO:0004672\|GO:0006468
	Stsc61382g00005	650	SMART	serkin_6	357	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc61382g00005	650	FunFam	PR5-like receptor kinase	421	612	-	-
	Stsc61382g00005	650	Gene3D	Transferase(Phosphotransferase) domain 1	429	605	-	-
	Stsc61382g00005	650	Pfam	Protein tyrosine and serine/threonine kinase	359	435	IPR001245	GO:0004672\|GO:0006468
	Stsc61382g00005	650	FunFam	Leucine-rich repeat receptor-like kinase	157	280	-	-
	Stsc61382g00005	650	ProSiteProfiles	Protein kinase domain profile.	357	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc61382g00005	650	Pfam	Protein kinase domain	436	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc61382g00005	650	Gene3D	Phosphorylase Kinase; domain 1	329	428	-	-
	Stsc61382g00005	650	ProSiteProfiles	Leucine-rich repeat profile.	221	244	IPR001611	GO:0005515
	Stsc61382g00005	650	Gene3D	Ribonuclease Inhibitor	26	155	IPR032675	-
	Stsc61382g00005	650	Gene3D	Ribonuclease Inhibitor	156	281	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc61382g00005	Stsc-Chr61382	15151	18507	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc61382g00005	342	624	Receptor kinase-like Gene Family	AT5G38280	56.410	1.37e-113	353

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Stsc61382g00005		Pkinase	1.7e-25	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc61382g00005	-		K00924	aip:107635702	979.548