Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61382g00003 ATGGCATACCTGAGATCAAGATTGAAAAATGGCATTGTTAGTATTTGTATGCTTGTGATGAGCTTGGGTTGTGTCAAGTCCAATAATGGCGAAGGTGAATACATGTTGAAGCTTCTGAATGCACTCCAACCCACTCCCTCAAACTGGTCCAAAAGCACCCACATGTGCCACTGGACAGGGGTGTTCTGCAACAATCAAACTGGTAGGATTGAACAGATTGATCTCAGACATATGTCGCTGAGGGGAACAGTTCCTTCAGGCCTCAATGATTCCCTCATACAACTCAAATACCTCTATCTCCACAACAATTATCTGAGTGGGCCTGTTCCCACTCTCGCCAACCTCACCTTCCTCCAAGAAGTGATCCTCGACAACAACAACTTCAACTCCATCCCTCGTGGTTGCTTCCATGCTCTCGCTAGTTTAAGCATCTTGAGCTTGACTAACAATACTAACCTCCCACCATGGAACTTTCCTATTGATTTGACTGCTCATTCCTCCCACCTCCAACAACTCTATCTGGAGGCTACAAATCTCATGGGCTCCTTACCAAACATATCCTATTCCTTTCCAACTATCCAAATTCTTTATGTCTCTAACAACCACCTCTCCTCCATCCCAGGGGGTTGCTTCCACAACCTGATCAATTTGATTGACCTCTCTTTGGCCAATAACACCAACCTCCCACCGTGGGCCTTCCCCCTCCGCTTCACTCAGAAACTCTACAGCCTCTACCTCGATGCTACAAATCTAATGGGATCCCTACCAAACTTATCTCATTTCTTCCCCGACTTGATAATTATTTCTCTCTCCAACAACAACCTTACCTCCATCCCCCAAGGTTGCTTCCAGGAGCTCAATCTTGTTTCTACAAACGTGGTGGGCTCCCTACCATCACAAATATTTGACTCCTTGACAAGTTTGCAGACTCTTCTTCTCTCCAACAACAGTCTCACTGGTGGCTTGCCACAGTCTTTCGGAGGCTCCAAGATTGCCACTTTGCATCTCAATAACCAGAAGGGTAGCGGGTTTTCGGGTCCAATTGATATCCTTTCAAACATGCTCGACTTAACTCAAGTGTGGCTTCAGTGGAACTCGTTTACAGGACCTATTCCTGACATGTCTCGTTGCACCTCCTTACAAGATTTGCAACTCGGCCACAATCAATTAACAGGCGTGGTTCCAAATATTGTTCTTCTATACTTGGATGATTTTTATTTGGGCTATAACTTTTTCCAAGGTCCTGTACCAAATATTACCTTCTCTGAGGTAAATCTTGGTGTTGACACCACAAATGGCTTCTGTCACAAAGATCCTGGACCTTGTGATAACAAAGTAACCATTTTGCTTGAAATTGCTGCCGAGTTTAATTATCCAATTTTGTTGGCACGTACATGGAAAGGAAATGACGCCTGTAAAAATTGGAGTTTCATTACATGCGATGACAAAAGTAAGATCAGAATGGTGAATTTGTCAAATCTAAATTTGACGGGCACAATCTCACCTGCATTCGCCAATTTAACTGATTTGCTGGAATTGTATTTGAATGGGAATAATTTGACGGGTGAAATACCAGATGGATTGACAAGTTTGCCTCAACTTGAGCTCGTGAATGTCTCTAACAACCACCTTGCAGGAAATATTCCCAAATTCTCACCAAAGGTTAAGGTTTTTACCGCAGGCAATGATTTTTTACAGCTTCCATCTAATGGTACTTCTGGCCATAGACAACCAAGTCGAATCTCAACTCCTTTGATTACAGGCATGATAGCAATAGCAGTGAAGGTATTAACTGAATCCAGCGCAAGTGGGGAGGACTTCATAAATGAGATAGCTAGTATCAGTAGAACTTCTCATGTGAACATTGTTTCACTCTTGGGATTTTGTTACGAAAAGTACAAAAGGGCACTCATTTATGAATTCATGCCGAATGGTTCTTTGGATAAGTTCATCTACAAACAAGAATCTCCCAATGCTTTTTGTAATTTGGATTGGAGCACATTGTTTCAAATTACAATTGGTATTGCAAGAGGATTAGAATATTTGCATCGAGGATGTAATACAAGAATCTTGCATCTTGATATTAAGCCTCAAAATATTCTTCTAGATGAAGATTTTTGTCCAAAAATTGCTGATTTCGGATTGGCAAAGATGTGCAAGAAGAAGGAGAGTATTGTATCTATACCAAGTACAAGAGGAACTCCCGGATATATCGCACCAGAAGTATTTAGTCGAACCTTTGGTAAAGTTTCTCACAAATCCGATGTGTACAGTTTTGGTATGTTGATTCTTGAATTGGTGGGAGGCAGAAAGAACTACGATACTGGCGAATCACTCACTAGTGAAATGTATTTTCCAGATTGGATTTACAGGGATCTGGAGGAGCAAAATATGCTTGGACGGGGTTTGGCCGCTACTGAGGAAGAGAATGATATGATAAAGAAAATTACTTTGGTGAGTTTATGGTGCATTCAAACAAGTCCATCAGATAGACCATCAATAAATGAAGTAGTGGAGATGTTAGAAGGGCCACTTGAATCAGTGCCATATCCTCCAAAGCTTGTGTTATATGCTCCTCAAATGTCTATGTCACAGTTTTCACGAATCTCCTATAGCATTACAGATGAGGAGGATTCTGATGAAATTGTTGAGGAGGCTGTTTCCATCAAATAA 2673 0.416 MAYLRSRLKNGIVSICMLVMSLGCVKSNNGEGEYMLKLLNALQPTPSNWSKSTHMCHWTGVFCNNQTGRIEQIDLRHMSLRGTVPSGLNDSLIQLKYLYLHNNYLSGPVPTLANLTFLQEVILDNNNFNSIPRGCFHALASLSILSLTNNTNLPPWNFPIDLTAHSSHLQQLYLEATNLMGSLPNISYSFPTIQILYVSNNHLSSIPGGCFHNLINLIDLSLANNTNLPPWAFPLRFTQKLYSLYLDATNLMGSLPNLSHFFPDLIIISLSNNNLTSIPQGCFQELNLVSTNVVGSLPSQIFDSLTSLQTLLLSNNSLTGGLPQSFGGSKIATLHLNNQKGSGFSGPIDILSNMLDLTQVWLQWNSFTGPIPDMSRCTSLQDLQLGHNQLTGVVPNIVLLYLDDFYLGYNFFQGPVPNITFSEVNLGVDTTNGFCHKDPGPCDNKVTILLEIAAEFNYPILLARTWKGNDACKNWSFITCDDKSKIRMVNLSNLNLTGTISPAFANLTDLLELYLNGNNLTGEIPDGLTSLPQLELVNVSNNHLAGNIPKFSPKVKVFTAGNDFLQLPSNGTSGHRQPSRISTPLITGMIAIAVKVLTESSASGEDFINEIASISRTSHVNIVSLLGFCYEKYKRALIYEFMPNGSLDKFIYKQESPNAFCNLDWSTLFQITIGIARGLEYLHRGCNTRILHLDIKPQNILLDEDFCPKIADFGLAKMCKKKESIVSIPSTRGTPGYIAPEVFSRTFGKVSHKSDVYSFGMLILELVGGRKNYDTGESLTSEMYFPDWIYRDLEEQNMLGRGLAATEEENDMIKKITLVSLWCIQTSPSDRPSINEVVEMLEGPLESVPYPPKLVLYAPQMSMSQFSRISYSITDEEDSDEIVEEAVSIK 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61382g00003 890 Pfam Leucine rich repeat N-terminal domain 447 481 IPR013210 -
Stsc61382g00003 890 Pfam Leucine rich repeat N-terminal domain 29 64 IPR013210 -
Stsc61382g00003 890 PANTHER OSJNBA0070M12.3 PROTEIN 192 276 - -
Stsc61382g00003 890 Gene3D Ribonuclease Inhibitor 283 438 IPR032675 -
Stsc61382g00003 890 Gene3D Ribonuclease Inhibitor 31 282 IPR032675 -
Stsc61382g00003 890 Gene3D Ribonuclease Inhibitor 443 567 IPR032675 -
Stsc61382g00003 890 SMART LRR_typ_2 214 235 IPR003591 -
Stsc61382g00003 890 SMART LRR_typ_2 305 328 IPR003591 -
Stsc61382g00003 890 SMART LRR_typ_2 262 285 IPR003591 -
Stsc61382g00003 890 SMART LRR_typ_2 377 400 IPR003591 -
Stsc61382g00003 890 SMART LRR_typ_2 190 213 IPR003591 -
Stsc61382g00003 890 SMART LRR_typ_2 115 138 IPR003591 -
Stsc61382g00003 890 SMART LRR_typ_2 507 531 IPR003591 -
Stsc61382g00003 890 SUPERFAMILY RNI-like 238 549 - -
Stsc61382g00003 890 SUPERFAMILY Protein kinase-like (PK-like) 591 874 IPR011009 -
Stsc61382g00003 890 Gene3D Transferase(Phosphotransferase) domain 1 646 848 - -
Stsc61382g00003 890 FunFam PR5-like receptor kinase 642 851 - -
Stsc61382g00003 890 SUPERFAMILY L domain-like 45 281 - -
Stsc61382g00003 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 690 702 IPR008271 GO:0004672|GO:0006468
Stsc61382g00003 890 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Stsc61382g00003 890 SMART serkin_6 562 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61382g00003 890 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515
Stsc61382g00003 890 Pfam Protein tyrosine and serine/threonine kinase 590 841 IPR001245 GO:0004672|GO:0006468
Stsc61382g00003 890 FunFam Leucine-rich repeat receptor-like kinase 444 568 - -
Stsc61382g00003 890 ProSiteProfiles Protein kinase domain profile. 562 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61382g00003 890 Gene3D Phosphorylase Kinase; domain 1 579 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61382g00003 Stsc-Chr61382 2789 6032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61382g00003 591 874 Receptor kinase-like Gene Family AT1G66910 58.333 6.59e-107 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc61382g00003 PK_Tyr_Ser-Thr 3.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61382g00003 - - aip:107635702 654.44