Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61361g00006 ATGGCCAGAAAGCATGAGGGTCATGCCATAGGGATAGATCTTGGTACAAAGTACTCTTGTGTTGCTGTATGGGATGATCAAAATGGTGTTGCCAAGATCATTCACAATGAACAAGGCAACAGAACCACACCTTCTTGTGTTGCTTTCACTGACTCACACAGATTGGTTGGTGATGCTGCCAAAAATCAAGCAGCTTTCAACCCAAAAAACACCATCTTTGATGCTAAGAGGTTGATTGGTAGGAAATTCAGTGATTCCATTATTCAGGATGACTTGAAGCTTTGGCCATTCAAAGTTGTATCCGGTGTTAAAGACAAGCCTCTCATTTCTGTTGAGTACAAAGGTGAAGAAAAGCTTCTTGCTGCTGAAGAAATCTCATCTATGATCCTCACAAAGATAAAGGAAATTGCTGAGGCTTTTCTTGAATCTCCTGTGAAGAATGCTGTTATTACTGTCCCTGCTTATTTCAATGACTCTCAGAGAAAAGCTACTCAAGATGCTGGTGCCATTGCTGGCCTCAATGTCATGAAGATCATCAATGAACCTACTGCTGCAGCTCTTGCCTATGGCCTTCAGAAGAGAGGTAACTGTTCCGAAGAGCGAAATGTATTCGTGTTTGATCTCGGGGGTGGTACTTTTGATGTGTCTCTTGTTACAATTAAAGATGATGTCTATCAAGTTAAGGCCACCGCCGGAGACACTCATCTCGGAGGAGAGGATTTCGATAACAGAATGATTGATTACTTTGTTAAGGAGTTCAATAAGAAGAACAATGTTGACATTAGTGAGAATCCAAGATCTCTCAGGAGGTTAAGAACTGCATGTGAGAAGGCTAAAGTGGATCTTTCATTTGTTAAACAAACATCAATAGAGGTTGATTCTTTGTTCCAAGGCATTGATTTTTCCTCATTGATAACTCGTTCAAGGTTTGAGGAACTCAACAAGGACCTGTTTGTGAAGTGTATGGACACTGTTGAGAAGTGTCTTGCTGATGCTAAAGTGGACAAGAACAATGTTCATGATGTTGTTCTTGTTGGTGGATCTTCAAGGATTCCAAAGCTGCAGAATCTTTTGCAGGAGTTCTTTCTAGGAAAGGATCTTTCCAAAGGCATTAACCCGGATGAAACTGTTGCTTATGGTGCTGCAGTTCAAGCTGCTTTATTATCCGAAAGCATGAACACTGCTCTGGATTTGGTTCTGTTAGATGTTACTCCTTTGTCTCTTGGTATTTCCACAAAAGGAGACATAATGTGTGTGTTTATTCCAAGAAATTCTGTTCTTCCTACTAAGCATGAGAAGCTCTTTGGTACTTTTGAAGATAACCAATCGACGGCGAAGATAGCTGTTTATGAAGGGGAGAGATCAAGGGCTAGTGATAACAACTTGCTGGGATTGTTTTGCTTATCTGATCTCGATCCTTCGCCGCGACGCCACCCTATAAAAGTGTGCTTTGATTTGGATGAGAATGGTATTCTGAAAGTGTATGCTGAAGAATCAAAGACAGGGAAGAAGAAAGGGGTTGCTATAGTGAATGATAAGGGAAGACTTACAGCACAAGAAATCAAGAGAATGATTCAAGAAGCTGAGATGTATAAGGAAGATGATGAAAAGTTTAAGGAGAATGTTGAGGCTAAGATTGCTTTGGAGAAATATGTTTGTGAATACCGTATTTTGTCCGACTAA 1683 0.4052 MARKHEGHAIGIDLGTKYSCVAVWDDQNGVAKIIHNEQGNRTTPSCVAFTDSHRLVGDAAKNQAAFNPKNTIFDAKRLIGRKFSDSIIQDDLKLWPFKVVSGVKDKPLISVEYKGEEKLLAAEEISSMILTKIKEIAEAFLESPVKNAVITVPAYFNDSQRKATQDAGAIAGLNVMKIINEPTAAALAYGLQKRGNCSEERNVFVFDLGGGTFDVSLVTIKDDVYQVKATAGDTHLGGEDFDNRMIDYFVKEFNKKNNVDISENPRSLRRLRTACEKAKVDLSFVKQTSIEVDSLFQGIDFSSLITRSRFEELNKDLFVKCMDTVEKCLADAKVDKNNVHDVVLVGGSSRIPKLQNLLQEFFLGKDLSKGINPDETVAYGAAVQAALLSESMNTALDLVLLDVTPLSLGISTKGDIMCVFIPRNSVLPTKHEKLFGTFEDNQSTAKIAVYEGERSRASDNNLLGLFCLSDLDPSPRRHPIKVCFDLDENGILKVYAEESKTGKKKGVAIVNDKGRLTAQEIKRMIQEAEMYKEDDEKFKENVEAKIALEKYVCEYRILSD 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61361g00006 560 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Stsc61361g00006 560 FunFam Heat shock 70 kDa protein 391 545 - -
Stsc61361g00006 560 PANTHER HEAT SHOCK PROTEIN 70KDA 9 554 IPR013126 GO:0005524|GO:0140662
Stsc61361g00006 560 Gene3D Actin; Chain A, domain 4 237 320 - -
Stsc61361g00006 560 FunFam heat shock 70 kDa protein-like 73 128 - -
Stsc61361g00006 560 PRINTS 70kDa heat shock protein signature 339 355 - -
Stsc61361g00006 560 PRINTS 70kDa heat shock protein signature 397 416 - -
Stsc61361g00006 560 PRINTS 70kDa heat shock protein signature 211 221 - -
Stsc61361g00006 560 PRINTS 70kDa heat shock protein signature 148 168 - -
Stsc61361g00006 560 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc61361g00006 560 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc61361g00006 560 PRINTS 70kDa heat shock protein signature 477 493 - -
Stsc61361g00006 560 PRINTS 70kDa heat shock protein signature 371 391 - -
Stsc61361g00006 560 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc61361g00006 560 Gene3D - 73 128 - -
Stsc61361g00006 560 FunFam Heat shock 70 kDa 237 320 - -
Stsc61361g00006 560 Pfam Hsp70 protein 9 554 IPR013126 GO:0005524|GO:0140662
Stsc61361g00006 560 Gene3D - 10 386 - -
Stsc61361g00006 560 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 397 549 IPR029047 -
Stsc61361g00006 560 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 558 IPR029047 -
Stsc61361g00006 560 Gene3D - 194 368 - -
Stsc61361g00006 560 Coils Coil 521 541 - -
Stsc61361g00006 560 SUPERFAMILY Actin-like ATPase domain 199 389 IPR043129 -
Stsc61361g00006 560 FunFam Heat shock protein 70 10 205 - -
Stsc61361g00006 560 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61361g00006 Stsc-Chr61361 21210 22971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61361g00006 1 556 Calmodulin-binding Proteins AT3G12580 66.667 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61361g00006 K03283 - gmx:102667578 771.155