Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61357g00005 ATGACTCGGCGGTGCTCACACTGCAGCAACAATGGGCACAACACGAGGACATGCCCTAACCGTGCCGGAGGAGGAGGAGTGAAGCTCTTCGGTGTGAGGCTGACGGATGGATCGATCATAAAGAAGAGTGCAAGCATGGGGAATCTCATGACTCTTCACCACCATTCTTCCTCCTCCTCCTTCCTCGCCGCCGCCGCCGATAACCCACCGTCGCCTGACCCGCTAGGTTACTTGTCCGACGACCCTGCTCACGCCTCGTCCTTCTCCAACCGCCGTGCCGAAAGAAAGAAAGGTGTTCCATGGACCGAAGAAGAACATCGGATGTTCTTAGTTGGTCTGCAAAAGCTGGGGAAAGGAGATTGGCGTGGAATAGCCCGGAATTTTGTTGTGTCAAGGACTCCTACTCAAGTAGCAAGTCATGCCCAAAAGTATTTTATTCGACAGAGTAATGCCAACCGGAGAAAGAGGCGTTCCAGCCTCTTTGACATGGCTCCAGATATGCCCACGGATTCACCTTTGGTGCTGGAAAAACAAGTAGTGCTTCTGACTTCTGAGAACTCACAACCTTCTAATGCAAAATCACAACCTTCATTAGATCTATCTCTCAAATCTGAAGTTGACCCCATGGAAATTGCTTCTGAAGAACATGTAGAACAGAACAATGTAACTGCAATGGAATCTACCGGTTTGAAACCAAAGGCTCCTGAATACTTCCCAAATTATGTACCTGTCCAATTTTCCATATGGCCATCACTTGCAGCTCCCTTACAAGAAAGTAATGGAGTAGAAACCTCTCATCATGAGGTCCTGAAGCCAATTCCAGTCGTTCCCAAGAATCCGGTCAATGTTGATGCACTTGTGGGAATGTCTAATCTGAGCATTGGGAACACACAGAAGATTCTTGATAGGGAGCCTTCCCCACTTTCCCTGAAATTGTTAGGAGAGCCATCGAGGCAGTCGGCATTCCATGCAAAAGCTCATGCACCTGTCGGCCGGTCGGACCTAAGCAGTGGCAAGAACACTCCAATCCAAGCAGTTTGA 1041 0.4909 MTRRCSHCSNNGHNTRTCPNRAGGGGVKLFGVRLTDGSIIKKSASMGNLMTLHHHSSSSSFLAAAADNPPSPDPLGYLSDDPAHASSFSNRRAERKKGVPWTEEEHRMFLVGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNANRRKRRSSLFDMAPDMPTDSPLVLEKQVVLLTSENSQPSNAKSQPSLDLSLKSEVDPMEIASEEHVEQNNVTAMESTGLKPKAPEYFPNYVPVQFSIWPSLAAPLQESNGVETSHHEVLKPIPVVPKNPVNVDALVGMSNLSIGNTQKILDREPSPLSLKLLGEPSRQSAFHAKAHAPVGRSDLSSGKNTPIQAV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61357g00005 346 MobiDBLite consensus disorder prediction 1 22 - -
Stsc61357g00005 346 MobiDBLite consensus disorder prediction 72 100 - -
Stsc61357g00005 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 149 IPR017930 -
Stsc61357g00005 346 FunFam transcription factor MYB1R1 99 150 - -
Stsc61357g00005 346 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677
Stsc61357g00005 346 Gene3D - 101 150 - -
Stsc61357g00005 346 PANTHER TRANSCRIPTION FACTOR KUA1 3 275 - -
Stsc61357g00005 346 Pfam Myb-like DNA-binding domain 100 145 IPR001005 -
Stsc61357g00005 346 ProSiteProfiles Myb-like domain profile. 93 145 IPR001005 -
Stsc61357g00005 346 SUPERFAMILY Homeodomain-like 95 150 IPR009057 -
Stsc61357g00005 346 ProSiteProfiles SANT domain profile. 101 149 IPR017884 -
Stsc61357g00005 346 MobiDBLite consensus disorder prediction 322 346 - -
Stsc61357g00005 346 MobiDBLite consensus disorder prediction 1 18 - -
Stsc61357g00005 346 CDD SANT 100 145 IPR001005 -
Stsc61357g00005 346 SMART sant 97 147 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61357g00005 Stsc-Chr61357 8797 10950 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc61357g00005 Myb_DNA-binding 5.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61357g00005 - - gmx:778036 471.47