Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61356g00001 ATGGAGTTCGACGAGTACGACTACTTGGAGAAGACGGTGGAGGACCATGACGACAGGGATTCCTCCAAGAAGACCAAGAAAGACAGCTCCGACAGGACCTACAGGAAGCGCGAGCTCGACGACGATTTCGACGCTGCCGCCGACGATAAGCGCATCAAGAAGCACAGGGCGGACGAAGAGAACGGCTCCAAGAAGGATCGGGATGACCGCGATAGGGAGCGCTCCTCCCGCGACAAGGACCGCCACAGCCACCGCAGCAGTGACAGGGATAGAGACAGAGACGGTGAGAGGAGCAGCAGAGACAGAGATAGAGATAGAGATAGAGACAGTGAAAGGAGCAGCAGGGACAGAGAGAAGGAGAGGGAGAAAAGCAAAGAGAGGGATAGGAGGGAGAGGGACAAAGATAGGGAGAGGAGAGAAAGGGATAGAGAGAAGGAGAAGGAAAGGGAAAGGGAGAGAAAGGAGAAGGAAAGAGAACGAGAGGAGAGCTCCAGAAGGAGCAGGTCTCGCTCCGAGCGAGACCGAGACAGAGAGAGGGAACGTGATTTTGACTCCCGAGATGGCCGGAGACACAGGGAAAAGAAAGAGGCTACGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCTTTGAAGGCAACGGAGAGGGACGTTTATGAGTTCTTCTCTAAAGCTGGCAAGGTGAGGGATGTTCGTCTTATCATGGATAGGAACTCAAGAAGATCTAAAGGAGTGGGGTATATTGAATTTTATGATGTGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTCCTTGGACAGCCTGTGATGGTTAAGCCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATAGTACTAGTGGAGCAGCTGGTGTAGCAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTAGGGAACCTTCACTTCAACATGACCGAGAGTCAACTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAATTGCCTCTTGATTTGGAAACTGGACATTGCAAGGGTTTTGGGTTTGTTCAATTTGCGCATCTTGAGCATTCCAAGGCAGCTCTGAGTTTAAATGGAAAACTGGAGATTGCTGGCAGGACTATCAAGGTATCATCTGTAACTGATCATGTTGGAAGCCAAGATACTACTGCAAAATCTGCAGATTTGGATGACGATGAAGGTGGATTGGCTTTAAATGCTCAATCAAGAGCTTTGCTTATGCAGAAGCTGGATCGCTCTGGCATAGCTGCTAGCATTGGTGTTCCGCCAATTGTGAATGGGTCGGCCCCTGTGCAACAAGTGCAACAAGCTGTTAGCTTGCCTGTTGGTAATCCAGGCATAATACCAGCACCAACTCTCCCAACACAACTTATGACTAACCCAGTTGCTGAACCTGTTGGAACCTCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCGGCCACCGAGACAGAACCAGATTTTGATTTAGACATTAAAGAGGACGTAGAAGAAGAGTGTTCTAAATTTGGGCGGGTGAAGCATATCTATGTTGACAAAAGTGCAGGTTTTGTGTATTTGCGGTTTGAAACGGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACCTGAGGTGGTTTGCACGGAGATTGATTTCAGCTTTGTTCATGCAACCTGAGATGTATGAAGCGAAGTTTAAAGGGGAGGTTTGA 1737 0.4876 MEFDEYDYLEKTVEDHDDRDSSKKTKKDSSDRTYRKRELDDDFDAAADDKRIKKHRADEENGSKKDRDDRDRERSSRDKDRHSHRSSDRDRDRDGERSSRDRDRDRDRDSERSSRDREKEREKSKERDRRERDKDRERRERDREKEKERERERKEKEREREESSRRSRSRSERDRDRERERDFDSRDGRRHREKKEATEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNSTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHSKAALSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLALNAQSRALLMQKLDRSGIAASIGVPPIVNGSAPVQQVQQAVSLPVGNPGIIPAPTLPTQLMTNPVAEPVGTSSECLLLKNMFDPATETEPDFDLDIKEDVEEECSKFGRVKHIYVDKSAGFVYLRFETVEAASAAQRAMHLRWFARRLISALFMQPEMYEAKFKGEV 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61356g00001 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 389 IPR000504 GO:0003723
Stsc61356g00001 578 SUPERFAMILY RNA-binding domain, RBD 310 388 IPR035979 GO:0003676
Stsc61356g00001 578 CDD RRM1_RBM39_like 210 282 - -
Stsc61356g00001 578 SMART rrm1_1 312 385 IPR000504 GO:0003723
Stsc61356g00001 578 SMART rrm1_1 486 562 IPR000504 GO:0003723
Stsc61356g00001 578 SMART rrm1_1 210 282 IPR000504 GO:0003723
Stsc61356g00001 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 508 559 IPR000504 GO:0003723
Stsc61356g00001 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 383 IPR000504 GO:0003723
Stsc61356g00001 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 278 IPR000504 GO:0003723
Stsc61356g00001 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Stsc61356g00001 578 NCBIfam splicing factor, CC1-like family 91 574 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc61356g00001 578 Gene3D - 139 296 IPR012677 -
Stsc61356g00001 578 SUPERFAMILY RNA-binding domain, RBD 482 566 IPR035979 GO:0003676
Stsc61356g00001 578 Coils Coil 127 166 - -
Stsc61356g00001 578 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 574 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc61356g00001 578 FunFam Splicing factor CC1-like 295 400 - -
Stsc61356g00001 578 CDD RRM3_RBM39_like 484 565 - -
Stsc61356g00001 578 Gene3D - 481 577 IPR012677 -
Stsc61356g00001 578 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 404 503 IPR029123 -
Stsc61356g00001 578 MobiDBLite consensus disorder prediction 1 210 - -
Stsc61356g00001 578 Gene3D - 307 403 IPR012677 -
Stsc61356g00001 578 FunFam Splicing factor CC1-like 137 294 - -
Stsc61356g00001 578 SUPERFAMILY RNA-binding domain, RBD 202 295 IPR035979 GO:0003676
Stsc61356g00001 578 MobiDBLite consensus disorder prediction 9 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61356g00001 Stsc-Chr61356 2235 7723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61356g00001 208 375 Eukaryotic Initiation Factors Gene Family AT1G49760 30.814 9.07e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61356g00001 K13091 - gmx:100802446 665.611