Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61353g00005 ATGTTATGGAGAAAAAGAAAACATGTTGATGATCATGTTGAAAATCTCATCAAAAGCTATGGAGCCTTGAGTCTTAAGCGATATACATACAAAGAAGTGAAGAAGATGACAAACTCATTTCATGAAAAATTAGGAGAAGGAGGATATGGCGTTGTATATAAAGCAAGTTTAGCTGATGGTCAACAGGTAGCAGTAAAAATACTAAAAGAGTCAAAGGGAACTATGGAAGAATTTGTAGAAGAGGTTTTCATCATTAGTCGAACATCTCATGTGAACATTGTTTCACTCTTGGGATTTCGTTACGAAAAGAATAAAAGAGCACTGATCTATGAATTCATGTCTAATGACTCTTTAGATAAATTCTCATACAGAAAAGAGTCTTCTAATACTCTCTGTAAGTTAGATTGTAACATATTGTACCAAATCTCGATTGGAATCGCTCGAGGATTGGAATACCTACACCGAGGATGTAACACAAGAATTTTGCATCTTGATATTAAACCTCAAAATATTCTTTTGGATGAACATTTTTGCCCAAAAATTGCAGATTTTGGATTGGCGAAAATATGTAAAAAGGATCAAAGTATTATATCTATATTAGGTACAAGAGGAACTCCAGGATATATTGCACCAGAAGTATTTAGCCGAACATATGGCGGAGTTTCTCACAAATCTGATGTATATAGTTATGGCATGTTAATTCTTGAAATTATTGGAGGAAGGCAGAACTATGAAAGTGAAGCATCGCAGAGTAGTGAAAGTTATTTTCCTGATTGGATCTATAAAGATCTTGAGCAAGGTAATATTCCTACAAGGTGTTTGCTACACAAAGAAGAAGAAAATGATATTGTAATGAAAATGACTTTGGTGAGCTTGTGGTATATTCAACCAAATCCAGCAGATAGGCCTTCCATAAGTAAAGTCATAGAGATGTTAGAAGGGCCTCTTGAATCAGTGCCTTATCCTCCAAAACCAGTCTTATTTTCACCTGAAAAGCTTGTCTCGCAATATTCGGATATATCTTATAGCAATGAATGTGATACAAATTCAATAACAACAGTGGAAATTGTCTCAAAAGTTTGTTACTTTGTTCTTTTCATGTCATACACACTCTTGAAGACAAAAGATGTGTTCGGTGTTTCAAAGACCAAAGGATAG 1158 0.3446 MLWRKRKHVDDHVENLIKSYGALSLKRYTYKEVKKMTNSFHEKLGEGGYGVVYKASLADGQQVAVKILKESKGTMEEFVEEVFIISRTSHVNIVSLLGFRYEKNKRALIYEFMSNDSLDKFSYRKESSNTLCKLDCNILYQISIGIARGLEYLHRGCNTRILHLDIKPQNILLDEHFCPKIADFGLAKICKKDQSIISILGTRGTPGYIAPEVFSRTYGGVSHKSDVYSYGMLILEIIGGRQNYESEASQSSESYFPDWIYKDLEQGNIPTRCLLHKEEENDIVMKMTLVSLWYIQPNPADRPSISKVIEMLEGPLESVPYPPKPVLFSPEKLVSQYSDISYSNECDTNSITTVEIVSKVCYFVLFMSYTLLKTKDVFGVSKTKG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61353g00005 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Stsc61353g00005 385 FunFam serine/threonine-protein kinase PBS1-like 5 112 - -
Stsc61353g00005 385 Gene3D Phosphorylase Kinase; domain 1 11 112 - -
Stsc61353g00005 385 PANTHER RUST RESISTANCE KINASE LR10-RELATED 13 334 IPR045874 GO:0004672
Stsc61353g00005 385 ProSiteProfiles Protein kinase domain profile. 38 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61353g00005 385 SMART serkin_6 38 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61353g00005 385 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Stsc61353g00005 385 Pfam Protein kinase domain 41 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61353g00005 385 SUPERFAMILY Protein kinase-like (PK-like) 15 312 IPR011009 -
Stsc61353g00005 385 Gene3D Transferase(Phosphotransferase) domain 1 113 319 - -
Stsc61353g00005 385 FunFam PR5-like receptor kinase 113 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61353g00005 Stsc-Chr61353 15189 16442 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61353g00005 25 334 Receptor kinase-like Gene Family AT5G38280 60.952 9.53e-127 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc61353g00005 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61353g00005 - - aip:107635702 491.5